PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526809.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Nin-like

Protein Properties

Length: 968aa MW: 106233 Da PI: 5.2866

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526809.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	93	2.2e-29	589	640	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++s+++l++yFs+++kdAAk++gvc+T+LKriCRq+GI RWP+Rki+++ XP_023526809.1 589 AEKNVSFSVLQQYFSGSLKDAAKSIGVCPTTLKRICRQHGILRWPSRKINKV 640 589***********************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 968 aa Download sequence
MENPFPSKEE GMGYWGPSRT QADALTFTDA GMRIPSPEDV LHSFSELMSF DSYAGWGNNC 60 AVMDPVFTSC GISSIPPTST CPSMEGSTFP EGGSHEILPL NELGGASISM ANSFTCGDEV 120 TFQQPDTEFG VSDVSDNTNE SGSNSNNVQD MDSCLISRPI SWSLDERMLR ALSLFKESSP 180 GGILAQVWVP MKHGNQFYLS TTDQPYLLDQ MLTGYREVSR WYTFSAEGKL GSLLGLPGRV 240 FNSKIPEWTS NVRYYSENEY LRMEHAIGHE VYGSIALPIF SNELERSCCA VLEVVTTKEK 300 PNFDAEIDIV SRALEIVSLR TIAPPRLYPQ CLKQNQRSVL AEITDVLRAV CHAHRLPLAL 360 TWIPCCYTLQ AVDEAARVRV KENDVSPKGK SVLCIEETAC YVNDKATQGF VHACMEHHLE 420 EGQGIVGKAL QSNHPFFYPD VKAYNINEYP LVHHARKFGL NAAVAIRLRS TYTGADDYIL 480 EFFLPVNMKG SSEQQLLLNN LSGTMQRMCR SLRTVSKDEL LGAKDPDAGF QSGMAGKSAT 540 TSRRNSQSTV TDSETRVSNS INDGTKAECP KKQTTNGTRR QADKKRSTAE KNVSFSVLQQ 600 YFSGSLKDAA KSIGVCPTTL KRICRQHGIL RWPSRKINKV NRSLGKIQTV LDSVKGVECR 660 LKFDPTTGGL MAAGSLIPEL NGQNSPLFSD NNPSIINLEP LPRDVNSVPP IPFDSQNPAV 720 KLEMDDQRNS SRSVLIPEKE PSVCQLDCGE GSKSTGLDAA SCQLSGLDVM DWDVPGNAAG 780 CITAKKGNGL DFVENNLRSC SFGAANGVGT MWEGSDGMNE HYQPTTSSMT DSSNSSGLLI 840 HGSSSSGQSV EERKHLQEKT SCVDSDSKIV VKASYKEDTV RFKFDPSLGY LQLYEEVGKR 900 FKLNQGTFQL KYLDDEKEWV MLVSNSDMQE CLEVMDEIGT RNVKFLVRDI TCAVGSSGSS 960 SCYLSGGS

Sequence ? help Back to Top

Protein Sequence Length: 968 aa Download sequence

MENPFPSKEE GMGYWGPSRT QADALTFTDA GMRIPSPEDV LHSFSELMSF DSYAGWGNNC  60
AVMDPVFTSC GISSIPPTST CPSMEGSTFP EGGSHEILPL NELGGASISM ANSFTCGDEV  120
TFQQPDTEFG VSDVSDNTNE SGSNSNNVQD MDSCLISRPI SWSLDERMLR ALSLFKESSP  180
GGILAQVWVP MKHGNQFYLS TTDQPYLLDQ MLTGYREVSR WYTFSAEGKL GSLLGLPGRV  240
FNSKIPEWTS NVRYYSENEY LRMEHAIGHE VYGSIALPIF SNELERSCCA VLEVVTTKEK  300
PNFDAEIDIV SRALEIVSLR TIAPPRLYPQ CLKQNQRSVL AEITDVLRAV CHAHRLPLAL  360
TWIPCCYTLQ AVDEAARVRV KENDVSPKGK SVLCIEETAC YVNDKATQGF VHACMEHHLE  420
EGQGIVGKAL QSNHPFFYPD VKAYNINEYP LVHHARKFGL NAAVAIRLRS TYTGADDYIL  480
EFFLPVNMKG SSEQQLLLNN LSGTMQRMCR SLRTVSKDEL LGAKDPDAGF QSGMAGKSAT  540
TSRRNSQSTV TDSETRVSNS INDGTKAECP KKQTTNGTRR QADKKRSTAE KNVSFSVLQQ  600
YFSGSLKDAA KSIGVCPTTL KRICRQHGIL RWPSRKINKV NRSLGKIQTV LDSVKGVECR  660
LKFDPTTGGL MAAGSLIPEL NGQNSPLFSD NNPSIINLEP LPRDVNSVPP IPFDSQNPAV  720
KLEMDDQRNS SRSVLIPEKE PSVCQLDCGE GSKSTGLDAA SCQLSGLDVM DWDVPGNAAG  780
CITAKKGNGL DFVENNLRSC SFGAANGVGT MWEGSDGMNE HYQPTTSSMT DSSNSSGLLI  840
HGSSSSGQSV EERKHLQEKT SCVDSDSKIV VKASYKEDTV RFKFDPSLGY LQLYEEVGKR  900
FKLNQGTFQL KYLDDEKEWV MLVSNSDMQE CLEVMDEIGT RNVKFLVRDI TCAVGSSGSS  960
SCYLSGGS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.1	0.0	Nin-like family protein