PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526629.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 385aa MW: 43068.9 Da PI: 5.0928

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526629.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	186	237	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ XP_023526629.1 186 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 237 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MEKDDNYSNE APMPPSFSSH HHHQHDLYNN QDQFMRSRPF ETSADNATGI LTYFPANPLP 60 PPPLQSVTSP DKLSFAEVMQ FADFGPKLSL NRFDEDDEPA GIDPVYFLKF PVLNNERAEE 120 AAAGEEEAAE MGGRIVGELE EEENFRNNKN GNNNNNNNNN NNNNNGNSNK RKRGRTVKTS 180 EEVESQRMTH IAVERNRRKQ MNEHLRVLRS LMPGSYVQRG DQASIIGGAI EFVRELEQLL 240 QCLESQKRRR LLGESPLQAG DTPPPQQPPF LPPGAGNFGG HQNEGQILET TAESKSCLAD 300 VEVKVLGFDA MIKILSRRRP GQLIKAIAAL EDLQLNILHT NITTIEQTVL YSFNVKIASE 360 SRFTAEDIAS SVQQIFGFIH ANTGM

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MEKDDNYSNE APMPPSFSSH HHHQHDLYNN QDQFMRSRPF ETSADNATGI LTYFPANPLP  60
PPPLQSVTSP DKLSFAEVMQ FADFGPKLSL NRFDEDDEPA GIDPVYFLKF PVLNNERAEE  120
AAAGEEEAAE MGGRIVGELE EEENFRNNKN GNNNNNNNNN NNNNNGNSNK RKRGRTVKTS  180
EEVESQRMTH IAVERNRRKQ MNEHLRVLRS LMPGSYVQRG DQASIIGGAI EFVRELEQLL  240
QCLESQKRRR LLGESPLQAG DTPPPQQPPF LPPGAGNFGG HQNEGQILET TAESKSCLAD  300
VEVKVLGFDA MIKILSRRRP GQLIKAIAAL EDLQLNILHT NITTIEQTVL YSFNVKIASE  360
SRFTAEDIAS SVQQIFGFIH ANTGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	187	198	RMTHIAVERNRR
2	247	251	KRRRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	1e-113	bHLH family protein