PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023526515.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 807aa MW: 90604.5 Da PI: 7.6497

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023526515.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	118.1	4.4e-37	132	208	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv+gCe+d+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_023526515.1 132 RCQVPGCEVDISELKGYHRRHRVCLRCANAATVVLDGETKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRRRKP 208 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MDNSPPSLLP QPLHDGAGMD LQLPMPDDSS TPLWDLGDLL DLAADDQFSF SLEQDNLPSA 60 SSHYLEIQSQ TSPPSNSDRI RKRDPRLTCS NFLAGRVPCA CPEIDAMLEE EAAATPGKKR 120 ARTARATAGT VRCQVPGCEV DISELKGYHR RHRVCLRCAN AATVVLDGET KRYCQQCGKF 180 HVLSDFDEGK RSCRRKLERH NNRRRRKPVD SAASMESDRS GVPLEDVSCD GDVGKDNILF 240 NNQTDQKEVV HLEPEHGLVT STICSAPDLQ NNMDGRLTLL AMGEAQVDGG KDNSKSLTSS 300 YCDNKSTYSS MCPTGRISFK LYDWNPAEFP RRLRLQIFEW LANMPVELEG YIRPGCIILT 360 AFVAMPKFMW IKLLEDPTTH VHNFVVARGR PLWGRGNMLV YLNNMIFRPV EGKSVMKIER 420 DMQAPRLHYI HPTCFEAGKP MEFVACGSHL RQPKFRSLVS FAGKYLSHDH SFVLSHCQKE 480 GDDAKWSDHQ LFKIYIPHTD HDLFGPAFVE VENHSGLSNF IPILIGDSET CSEMKTIQER 540 LDMSLLVEAT GSSHESCEHF SLRQKVHSEL MMDISWLLKK PSSEHVQHIM NSSQIQRFTR 600 LLKFLIRNDS TVILGRVLEH LKIVMENVES NGAVNGFIYP DLRFFEKYLD SARDVLQLNL 660 HKTGNSVLHL GHPKSKGDRV SQSCSENKLV SVVPGIVLKM VSRENGHFRS VAGSTSIGSV 720 ETVPLLNKNL GEKITVQAFT VKEESRKQEH SRKSCGLLFS GAHFRRQTTL FAVTFVAVCF 780 GICAALVHSH KVGDFAVSIR RCLIDKL

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MDNSPPSLLP QPLHDGAGMD LQLPMPDDSS TPLWDLGDLL DLAADDQFSF SLEQDNLPSA  60
SSHYLEIQSQ TSPPSNSDRI RKRDPRLTCS NFLAGRVPCA CPEIDAMLEE EAAATPGKKR  120
ARTARATAGT VRCQVPGCEV DISELKGYHR RHRVCLRCAN AATVVLDGET KRYCQQCGKF  180
HVLSDFDEGK RSCRRKLERH NNRRRRKPVD SAASMESDRS GVPLEDVSCD GDVGKDNILF  240
NNQTDQKEVV HLEPEHGLVT STICSAPDLQ NNMDGRLTLL AMGEAQVDGG KDNSKSLTSS  300
YCDNKSTYSS MCPTGRISFK LYDWNPAEFP RRLRLQIFEW LANMPVELEG YIRPGCIILT  360
AFVAMPKFMW IKLLEDPTTH VHNFVVARGR PLWGRGNMLV YLNNMIFRPV EGKSVMKIER  420
DMQAPRLHYI HPTCFEAGKP MEFVACGSHL RQPKFRSLVS FAGKYLSHDH SFVLSHCQKE  480
GDDAKWSDHQ LFKIYIPHTD HDLFGPAFVE VENHSGLSNF IPILIGDSET CSEMKTIQER  540
LDMSLLVEAT GSSHESCEHF SLRQKVHSEL MMDISWLLKK PSSEHVQHIM NSSQIQRFTR  600
LLKFLIRNDS TVILGRVLEH LKIVMENVES NGAVNGFIYP DLRFFEKYLD SARDVLQLNL  660
HKTGNSVLHL GHPKSKGDRV SQSCSENKLV SVVPGIVLKM VSRENGHFRS VAGSTSIGSV  720
ETVPLLNKNL GEKITVQAFT VKEESRKQEH SRKSCGLLFS GAHFRRQTTL FAVTFVAVCF  780
GICAALVHSH KVGDFAVSIR RCLIDKL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	194	206	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein