PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023526440.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family bHLH
Protein Properties Length: 347aa    MW: 36345.2 Da    PI: 8.7371
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023526440.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.6e-11281326655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR ri  ++ +L++l+P+     +k  s +++L +Av++Ik Lq
  XP_023526440.1 281 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 326
                     689*********************7....688*****************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    
MYQSNSSSSS SQKFMASANA GVGSGGGGGG GGGGGGGLTR YGSAPGSLLT SAVDSVIGSR  60
HPDSVSSLHT PPSFSGHYFS SADSSLKSSS STAPAARSYG IHDLALGDFS TARNFNSNGG  120
QSSSSSPLVR QKSSPAGFLS HLSVAERNGG FSLTMGGGGN GIGRLKSQVR MNGQDSLSQI  180
SEMSESFIEA ANSSGNGLTP STFGMDSSWD TSNNSIVFGA PHAKTSRHHP DAEFFTTLES  240
QFSMPQTTLE MATVERLLHI PEHSAPCKIR AKRGCATHPR SIAERERRTR ISGKLKKLQD  300
LVPNMDKQTS YSDMLDLAVQ HIKGLQHQIQ MLNKEAESCT CGNKECL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.18e-65bHLH family protein