PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525853.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 433aa MW: 48012.2 Da PI: 8.9599

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525853.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.6	3.5e-16	241	286	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ ErrRRdriN+++ L++l+P+a K +Ka++L +++eY+k+Lq XP_023525853.1 241 HNQSERRRRDRINEKMKALQKLVPNA-----SKTDKASMLDEVIEYLKQLQ 286 9**********************9.....7****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence
MSHCVVPKWN MSHERQEQVE EEEGKRSFHV PAQKNPHSTT NPLVPFYKQM AKHGVTELTW 60 QNGQLALHGV DGMHPTGLTK PTWSRANETL ESVVNQANLQ TQGPNLIHQG EPLVHTGRTL 120 TPSGANGKWV ERGNQEPPAR KKTRSTSDYA GKNVSTSNNN TMQVDLGDHS VCGSASAAFC 180 RDNDTTLMTW ASFDSRSMKT KSIDEDSACH VESENQEEEQ DVKRGASRSH SARRSRAAAI 240 HNQSERRRRD RINEKMKALQ KLVPNASKTD KASMLDEVIE YLKQLQAQVQ FMSVRSMQQM 300 MMPIGMQQQL QMSLLARMGM GVGLGMGMGM LDMSGMARPA PQSLPPLIHP NSVPATPPAF 360 VPPHFLMPPA IPRQDPTQPK PASNDSVDPF CAFLAQTMNM DIYNKMAAFY RQQVNQTTNA 420 TSSPTQSNNV QGN

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence

MSHCVVPKWN MSHERQEQVE EEEGKRSFHV PAQKNPHSTT NPLVPFYKQM AKHGVTELTW  60
QNGQLALHGV DGMHPTGLTK PTWSRANETL ESVVNQANLQ TQGPNLIHQG EPLVHTGRTL  120
TPSGANGKWV ERGNQEPPAR KKTRSTSDYA GKNVSTSNNN TMQVDLGDHS VCGSASAAFC  180
RDNDTTLMTW ASFDSRSMKT KSIDEDSACH VESENQEEEQ DVKRGASRSH SARRSRAAAI  240
HNQSERRRRD RINEKMKALQ KLVPNASKTD KASMLDEVIE YLKQLQAQVQ FMSVRSMQQM  300
MMPIGMQQQL QMSLLARMGM GVGLGMGMGM LDMSGMARPA PQSLPPLIHP NSVPATPPAF  360
VPPHFLMPPA IPRQDPTQPK PASNDSVDPF CAFLAQTMNM DIYNKMAAFY RQQVNQTTNA  420
TSSPTQSNNV QGN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	245	250	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00050.1	4e-34	bHLH family protein