PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525837.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 386aa MW: 43908.3 Da PI: 10.0648

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525837.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.9	1.7e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++I+++mg ++R +k+c +rw +yl XP_023525837.1 4 RQRWQPEEDALLRAYVKQYGPKEWNLISQRMGkpLHRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	33	1.4e-10	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + XP_023525837.1 59 KGSLSAEEQTLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 57789***************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence
MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLHR DPKSCLERWK NYLKPGLKKG 60 SLSAEEQTLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKK LQKAQNLTQR 120 RDYQNSDGNL SISGVSSPEK ALQGPYDHIL ETFAEKYVQP KLYSAAFQSP PPPPPPLANV 180 MPRLPVPDAD PVLSLGSVNS TTSSSTVLPL WMNVNSTSTA SSSTSSTTPS PSVSLTLSPS 240 EPVVLDSEMN RLLPVQQMGA LVLYCKELEE GRQSWLQHKK EATWRLNRLE QQLESEKARK 300 KREKMEEMEA KIRRLREEEM AYLGRIESDY REQVSAMRRD AENKEAKLLE AWCSKHTKLT 360 KLVEQIGNQG QGLVVVAAGN SKDMIH

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence

MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLHR DPKSCLERWK NYLKPGLKKG  60
SLSAEEQTLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKK LQKAQNLTQR  120
RDYQNSDGNL SISGVSSPEK ALQGPYDHIL ETFAEKYVQP KLYSAAFQSP PPPPPPLANV  180
MPRLPVPDAD PVLSLGSVNS TTSSSTVLPL WMNVNSTSTA SSSTSSTTPS PSVSLTLSPS  240
EPVVLDSEMN RLLPVQQMGA LVLYCKELEE GRQSWLQHKK EATWRLNRLE QQLESEKARK  300
KREKMEEMEA KIRRLREEEM AYLGRIESDY REQVSAMRRD AENKEAKLLE AWCSKHTKLT  360
KLVEQIGNQG QGLVVVAAGN SKDMIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	304	RKKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	7e-59	MYB family protein