PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525818.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 520aa MW: 58315.2 Da PI: 6.1759

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525818.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.2	2.8e-15	194	253	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_023525818.1 194 SQFRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 253 789****************655454478446***********************98 PP
2	AP2	46.6	8.3e-15	298	347	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_023525818.1 298 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 347 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 520 aa Download sequence
MSNWLGFSLT PHLKIHDATS ADDQHPNPSS FPPLMPLRSD GSLCIAAAHD WRSYENEMGA 60 RNEEESPKLE DFLGNCYSNS PPNDQTHNNN TNFIQANTNN NYHYQTDHHP LISNNGNAIY 120 KSWLGPTTSS PQNECGFRSL SLGMSPNSHN DIVSLPSPPH MAVDSRKRPM PVGKPPVKEP 180 VPRKSIDTFG QRTSQFRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY LGGYDKEEKA 240 ARAYDLAALK YWGPTTHINF SLSTYENELE EMKNMTRQEF VANLRRKSSG FSRGASMYRG 300 VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDISRYD 360 VKRICSSSTL IASDLAKRSP LKDGIPSMAE EYSACASPTS SQPLLAITEN GDVESHHELV 420 DMVWCDNGGK DDDTQQEENV AKMNDDSSLM GSRNETEASK CCMVQNNGEF GVGVGGGEYS 480 QGYYSMEEAK YEDGRDENRE VENDATLAHH QVPMFALWNE

Sequence ? help Back to Top

Protein Sequence Length: 520 aa Download sequence

MSNWLGFSLT PHLKIHDATS ADDQHPNPSS FPPLMPLRSD GSLCIAAAHD WRSYENEMGA  60
RNEEESPKLE DFLGNCYSNS PPNDQTHNNN TNFIQANTNN NYHYQTDHHP LISNNGNAIY  120
KSWLGPTTSS PQNECGFRSL SLGMSPNSHN DIVSLPSPPH MAVDSRKRPM PVGKPPVKEP  180
VPRKSIDTFG QRTSQFRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY LGGYDKEEKA  240
ARAYDLAALK YWGPTTHINF SLSTYENELE EMKNMTRQEF VANLRRKSSG FSRGASMYRG  300
VTRHHQHGRW QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDISRYD  360
VKRICSSSTL IASDLAKRSP LKDGIPSMAE EYSACASPTS SQPLLAITEN GDVESHHELV  420
DMVWCDNGGK DDDTQQEENV AKMNDDSSLM GSRNETEASK CCMVQNNGEF GVGVGGGEYS  480
QGYYSMEEAK YEDGRDENRE VENDATLAHH QVPMFALWNE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-126	AP2 family protein