PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525593.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 1060aa MW: 117620 Da PI: 8.741

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525593.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	129.2	1.5e-40	141	218	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvC+ hsk++++lv++l+qrfCqqCsrfh lsefD++krsCrrrLa+hn rrrk+q+ XP_023525593.1 141 MCQVDNCKEDLSNAKDYHRRHKVCQLHSKSTKALVANLMQRFCQQCSRFHPLSEFDDGKRSCRRRLAGHNWRRRKTQP 218 6**************************************************************************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 1060 aa Download sequence
MDDLGAQVVP PVFIHQTFPT HYTGLPSTSN KRPLSYHNHL HHYSHTWNPK TWDWDTDTFL 60 IKPSDPALLH SDALSSKPHF LPATPLPSTS NNNTLHLQDD QTLRLNLGPA PNFNCVEQPL 120 SKPPKKLRPD PGSPAAATYP MCQVDNCKED LSNAKDYHRR HKVCQLHSKS TKALVANLMQ 180 RFCQQCSRFH PLSEFDDGKR SCRRRLAGHN WRRRKTQPED VTSRLTPPGS RGPPSGGKLD 240 IFSLLAVLAR AQGKNEGQSV ESLLSANSDQ LIQTLTKVNS LPLPAEFAAK VPNLENFMGE 300 ASPGSSLQHQ NKFNRNPSSS STMDLLTVLS ATLVASAPDA LAMLSQKSSP SSASEKTRSS 360 CPSGSDLQNR PLEFPSVGGE RSSTSYQSPV EESDGQVQGS RVGLPLQLFS SSPEHDTPLN 420 LTASRKYFSS DSSNPIEERS PSSSPPLLQK LFPVQRSEET SSNRKIPIRK EVSGIVEVPK 480 PPSSAMPFEL FRESDRGGGP NLLHTVPYQA GYTSSGSDHS PSNLNSDAQD RTGRISFKLF 540 DKDPSQFPGT LRTQIYNWLS NCPSEMESYI RPGCVVLSIY MSMSSIAWEQ LEENLVLHVK 600 SLVHGENLEF WRSGRFLVYS GRQLASHKDG KIRLNKSSKA WSNPELISVS PLAVVSGQKT 660 SFLLRGRNLK NPCTKIHCTF MGGYISKEVM GLSRQGTYDE IHSGNYKIGD ASPSTLGRCF 720 IEVENGFRGN SFPVIIADSA ICKELRHLES VFDEFRVTDI SSESHSCVPS QLRLKDETLQ 780 FLNELGWLFQ RERSSSKLDN PIFLIRRFKF LLTFSVERDF CALLKTLLDI LVKKCLITNG 840 LSMKSLEMIS EVQLLNRAVK RRCRPMVDLL VHYYVSGFGD EEKKYLFPPN VIGPGRITPM 900 HLAASMADSD DMVDALTNDP LEIGLNCWSS QVDASGKSAR GYALMRGNHS CNELVDRKLG 960 DRKKGEVSVR VGNEIEEVGV SSSERSRVQG RCCSRCAVVA GRCYKRVPGS GTHRLLHRPY 1020 IHSMLAIGAV CVCVCLFLRG SPDIGLVAPF KWENLRYGTI

Sequence ? help Back to Top

Protein Sequence Length: 1060 aa Download sequence

MDDLGAQVVP PVFIHQTFPT HYTGLPSTSN KRPLSYHNHL HHYSHTWNPK TWDWDTDTFL  60
IKPSDPALLH SDALSSKPHF LPATPLPSTS NNNTLHLQDD QTLRLNLGPA PNFNCVEQPL  120
SKPPKKLRPD PGSPAAATYP MCQVDNCKED LSNAKDYHRR HKVCQLHSKS TKALVANLMQ  180
RFCQQCSRFH PLSEFDDGKR SCRRRLAGHN WRRRKTQPED VTSRLTPPGS RGPPSGGKLD  240
IFSLLAVLAR AQGKNEGQSV ESLLSANSDQ LIQTLTKVNS LPLPAEFAAK VPNLENFMGE  300
ASPGSSLQHQ NKFNRNPSSS STMDLLTVLS ATLVASAPDA LAMLSQKSSP SSASEKTRSS  360
CPSGSDLQNR PLEFPSVGGE RSSTSYQSPV EESDGQVQGS RVGLPLQLFS SSPEHDTPLN  420
LTASRKYFSS DSSNPIEERS PSSSPPLLQK LFPVQRSEET SSNRKIPIRK EVSGIVEVPK  480
PPSSAMPFEL FRESDRGGGP NLLHTVPYQA GYTSSGSDHS PSNLNSDAQD RTGRISFKLF  540
DKDPSQFPGT LRTQIYNWLS NCPSEMESYI RPGCVVLSIY MSMSSIAWEQ LEENLVLHVK  600
SLVHGENLEF WRSGRFLVYS GRQLASHKDG KIRLNKSSKA WSNPELISVS PLAVVSGQKT  660
SFLLRGRNLK NPCTKIHCTF MGGYISKEVM GLSRQGTYDE IHSGNYKIGD ASPSTLGRCF  720
IEVENGFRGN SFPVIIADSA ICKELRHLES VFDEFRVTDI SSESHSCVPS QLRLKDETLQ  780
FLNELGWLFQ RERSSSKLDN PIFLIRRFKF LLTFSVERDF CALLKTLLDI LVKKCLITNG  840
LSMKSLEMIS EVQLLNRAVK RRCRPMVDLL VHYYVSGFGD EEKKYLFPPN VIGPGRITPM  900
HLAASMADSD DMVDALTNDP LEIGLNCWSS QVDASGKSAR GYALMRGNHS CNELVDRKLG  960
DRKKGEVSVR VGNEIEEVGV SSSERSRVQG RCCSRCAVVA GRCYKRVPGS GTHRLLHRPY  1020
IHSMLAIGAV CVCVCLFLRG SPDIGLVAPF KWENLRYGTI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	857	862	RAVKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	SBP family protein