PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023525463.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 25265.8 Da    PI: 9.3649
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023525463.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF100.18.4e-32959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+
  XP_023525463.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59
                    79***********************************************95 PP
2K-box102.55.5e-34761773100
           K-box   3 kssgksleeakaeslqqelakLkkeienLq....reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                     +s ++s++e +++++qqe+akL+++i++Lq    +  Rhl+G++L+ L++keL+qLe++Le+++++iRskK+e+ll++ie+lqk+e el++en +
  XP_023525463.1  76 SSATSSVTELNTQYYQQESAKLRQQIQMLQnsnsNLVRHLMGDSLSALTVKELKQLENRLERGITRIRSKKHEMLLAEIEYLQKREIELENENVC 170
                     45566699**********************8766567********************************************************** PP

           K-box  94 Lrkklee 100
                     +r+k++e
  XP_023525463.1 171 IRTKIAE 177
                     ****986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN  60
SIKTTIDRYK KACSDSSATS SVTELNTQYY QQESAKLRQQ IQMLQNSNSN LVRHLMGDSL  120
SALTVKELKQ LENRLERGIT RIRSKKHEML LAEIEYLQKR EIELENENVC IRTKIAEVER  180
LHQANMESGQ ELNAIQALAS RNFFSPNIME GGAVTFSHQD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-115MIKC_MADS family protein