PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023525421.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 239aa MW: 27022.5 Da PI: 8.6885 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.4e-17 | 93 | 147 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq Lee F+ ++++ +++ eLA++l+L rqV vWFqNrRa+ k XP_023525421.1 93 RKKLRLSREQSAFLEESFKDHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTK 147 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 121.8 | 3.5e-39 | 93 | 183 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rls+eq+++LEesF+ +++L p++Kvelar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+++n++L+ke ++Lr +lk XP_023525421.1 93 RKKLRLSREQSAFLEESFKDHHTLYPKQKVELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQQNRKLRKELQDLR-ALK 183 69*************************************************************************************9.555 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MELGLRLGDQ QQTHSHNPKL LPSFFHPPPI LHLALLPPTP TPTPDGGGGE SPRNPYLCSS 60 LELGLYEVED HQGNSDRGCS RGSDEDDQIL GSRKKLRLSR EQSAFLEESF KDHHTLYPKQ 120 KVELARRLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKN CCQTLTQQNR KLRKELQDLR 180 ALKTTDSLFM HSPATTLTMC ASCERAAVLH PLNSKASGFS FTTNGSFPFS PTDPSTPKN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 92 | 98 | SRKKLRL |
2 | 142 | 150 | RRARTKLKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 1e-62 | HD-ZIP family protein |