PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023525165.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 463aa MW: 51536.9 Da PI: 8.589

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023525165.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.3e-17	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ XP_023525165.1 59 REKWTEEEHQRFLEALKLYGRG-WRQIKEHVG-TKTAVQIRSHAQKF 103 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence
MAIQEKNEGA LSNSSIGANN CLSSDGTQLD PLMRVSSLCS YGNESSLKVR KPYTISKQRE 60 KWTEEEHQRF LEALKLYGRG WRQIKEHVGT KTAVQIRSHA QKFFSKVVRE PSGSNDSSIN 120 PIEIPPPRPK RKPLHPYPRK AVDSLKAISV AREPERSPSP NLSIAEKETQ SPTSVLTAFS 180 SDDQISTVSV QHNRCSSPIS QAVDIQSTRL PSVRKGEMLL LESSSERFPE DFLTLKSKPG 240 SASKKLDNKL HSPVKSIKLF GRTVMVTDDK KPSLHDFEVT KSSVLDGESK NECGVYAEKP 300 VQMLPSKHMD VNLSLRMDNN GDWNMSPGGA PTNNTALNQD NSVLYVEAIA NAPQTCWSLY 360 QSVPYFYLAP PDQTNRGMEE RMQNDNSVES SCVDSCSGSS SKDKNENQSP EFECQDPCLV 420 GRGNRNQSKK GFVPYKRCLA QRDASSSFIV SEEREGRRVR VCL

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence

MAIQEKNEGA LSNSSIGANN CLSSDGTQLD PLMRVSSLCS YGNESSLKVR KPYTISKQRE  60
KWTEEEHQRF LEALKLYGRG WRQIKEHVGT KTAVQIRSHA QKFFSKVVRE PSGSNDSSIN  120
PIEIPPPRPK RKPLHPYPRK AVDSLKAISV AREPERSPSP NLSIAEKETQ SPTSVLTAFS  180
SDDQISTVSV QHNRCSSPIS QAVDIQSTRL PSVRKGEMLL LESSSERFPE DFLTLKSKPG  240
SASKKLDNKL HSPVKSIKLF GRTVMVTDDK KPSLHDFEVT KSSVLDGESK NECGVYAEKP  300
VQMLPSKHMD VNLSLRMDNN GDWNMSPGGA PTNNTALNQD NSVLYVEAIA NAPQTCWSLY  360
QSVPYFYLAP PDQTNRGMEE RMQNDNSVES SCVDSCSGSS SKDKNENQSP EFECQDPCLV  420
GRGNRNQSKK GFVPYKRCLA QRDASSSFIV SEEREGRRVR VCL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	5e-50	MYB_related family protein