PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524606.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 404aa MW: 45776.1 Da PI: 10.0067

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524606.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.2e-18	26	73	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll +v +G g+W+++ar g++Rt+k+c++rw++yl XP_023524606.1 26 KGPWTPEEDSLLFSYVSIHGEGHWNSVARSTGLKRTGKSCRLRWLNYL 73 79********************************************97 PP
2	Myb_DNA-binding	46.2	1.1e-14	79	122	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T +E++l+++++ ++G++ W++Ia+ ++ gRt++++k++w++ XP_023524606.1 79 RGNITLQEQLLILQLHSRWGNR-WSKIAQFLP-GRTDNEIKNYWRT 122 7899****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence
MTYHETRLAR GQTELSKRVP MEDLKKGPWT PEEDSLLFSY VSIHGEGHWN SVARSTGLKR 60 TGKSCRLRWL NYLRPNVRRG NITLQEQLLI LQLHSRWGNR WSKIAQFLPG RTDNEIKNYW 120 RTRVQKQAKQ LNCDVNSQRF RDAMRHVWIP RMVERITATH SLQFSQSHFH PNPKISLLRT 180 LASHGSNRKA RTSLSLRASW PSISIALFGS GFLLGPLLDG LHSRVNLVVY QMGSVDIGPL 240 RTNICVPFLL GVFYCTVGLI QLYIDENFSP NRPEGSLGKT VASLIALALF IELSAEMYKA 300 GVAPNIEAYA LFAGAEFIWA LLDSSLLGFS LACVVGLLCP LAEIPIMKFF HLWYYPQANV 360 EIFGEGLISW TITCYFVYTP FLINLSRWLK SVLDSAAVKK DGSA

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence

MTYHETRLAR GQTELSKRVP MEDLKKGPWT PEEDSLLFSY VSIHGEGHWN SVARSTGLKR  60
TGKSCRLRWL NYLRPNVRRG NITLQEQLLI LQLHSRWGNR WSKIAQFLPG RTDNEIKNYW  120
RTRVQKQAKQ LNCDVNSQRF RDAMRHVWIP RMVERITATH SLQFSQSHFH PNPKISLLRT  180
LASHGSNRKA RTSLSLRASW PSISIALFGS GFLLGPLLDG LHSRVNLVVY QMGSVDIGPL  240
RTNICVPFLL GVFYCTVGLI QLYIDENFSP NRPEGSLGKT VASLIALALF IELSAEMYKA  300
GVAPNIEAYA LFAGAEFIWA LLDSSLLGFS LACVVGLLCP LAEIPIMKFF HLWYYPQANV  360
EIFGEGLISW TITCYFVYTP FLINLSRWLK SVLDSAAVKK DGSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G48000.1	3e-73	MYB family protein