PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524476.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 544aa MW: 60811.4 Da PI: 7.7334

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524476.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.4	6.7e-08	422	470	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v ++G g+W+ I r +Rt ++k++w+++l XP_023524476.1 422 SWTLSEVMKLVEGVSEYGVGRWTEIKRLQFsssSHRTSVDLKDKWRNLL 470 5**********************876558999***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPAPEDDV LGVEHFLQPD YNKCFPGSVL 60 DFNTFHSHKC LSIENFSFAV EFDQIKIDSE SLHSSLTLEG ERTKQEVRDE KSKGTDDVVC 120 SGINKLSGTV NRQTTDDIFN LAPGSCNASF LGNVDFGYPQ GFCTTDLGVD LSFAGGLGPK 180 PLCDWNSPFI RDIQLKNSLS VAGHNVGFDQ KDAKLMISSS TGSSGCSGSS TACLNDENMS 240 DDRPVKRKRL SSCDSSKINS EHNESKIVPF NEGNKVETLV TEKRLRKPPR RYSEESIEQK 300 SRSNFKKSAL KASKDKSLPS VCHRHQWQKK LKAAPIVPKD KSFNGGCIQV PFGLPIEEGH 360 STKKRICWEP EEIKDNRILC IKDKNDVESF SAESDDENTE DECVMKGNTT QKGNSRRKHH 420 ISWTLSEVMK LVEGVSEYGV GRWTEIKRLQ FSSSSHRTSV DLKDKWRNLL KASDTQLQNR 480 RKVVLGRKQA LQQVPESVLC RVRELAAIYP YPRENKSKDT CSAPTTSSFK STTSNMLVCL 540 PTVM

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MNAASKETMM TSNQATKMFT YEFPDVDSDL SIFPAPEDDV LGVEHFLQPD YNKCFPGSVL  60
DFNTFHSHKC LSIENFSFAV EFDQIKIDSE SLHSSLTLEG ERTKQEVRDE KSKGTDDVVC  120
SGINKLSGTV NRQTTDDIFN LAPGSCNASF LGNVDFGYPQ GFCTTDLGVD LSFAGGLGPK  180
PLCDWNSPFI RDIQLKNSLS VAGHNVGFDQ KDAKLMISSS TGSSGCSGSS TACLNDENMS  240
DDRPVKRKRL SSCDSSKINS EHNESKIVPF NEGNKVETLV TEKRLRKPPR RYSEESIEQK  300
SRSNFKKSAL KASKDKSLPS VCHRHQWQKK LKAAPIVPKD KSFNGGCIQV PFGLPIEEGH  360
STKKRICWEP EEIKDNRILC IKDKNDVESF SAESDDENTE DECVMKGNTT QKGNSRRKHH  420
ISWTLSEVMK LVEGVSEYGV GRWTEIKRLQ FSSSSHRTSV DLKDKWRNLL KASDTQLQNR  480
RKVVLGRKQA LQQVPESVLC RVRELAAIYP YPRENKSKDT CSAPTTSSFK STTSNMLVCL  540
PTVM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72650.1	2e-29	MYB_related family protein