PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524185.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

AP2

Protein Properties

Length: 454aa MW: 51660.8 Da PI: 9.3995

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524185.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.1	6.6e-16	167	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a+ k++g XP_023524185.1 167 SQYRGVSRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAAFKYWG 226 78*****************988886678446***********************98 PP
2	AP2	51.8	2e-16	269	320	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+fgt eeAa+a++ a+ k++g XP_023524185.1 269 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 320 57**************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence
MESLSTLQPQ EMLPNISPKL EDFLGSANHG REATALSLDS IYYNQNDGAD AVSERQHCLN 60 LFKQQEQHIL FGMFQFPAED ANKESHIASH SYEIRHALEQ RIDRMSSQDV EPLSLSMSPG 120 SQSSCVTAPT QNCHPGLATM ETKKRGLLGR KKPVHRKSID TFGQRTSQYR GVSRHRWTGR 180 YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARAYDLA AFKYWGPSTH LNFPLKNYQV 240 EIEEMKNMNR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 300 FGTQEEAAEA YDIAAIKFRG TNAVTNFDTS RYNVERIMVS SSLLSREIAR RNKEHKLTNA 360 IERKEPTQNI DRIDPSEISN SNNIDLRSTF DDTMLLDRNT TIESIDRKSV TSGGYLNHLM 420 GVETAMGKDS RKFRAHFSNA SVSLPVMSSV WNDV

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence

MESLSTLQPQ EMLPNISPKL EDFLGSANHG REATALSLDS IYYNQNDGAD AVSERQHCLN  60
LFKQQEQHIL FGMFQFPAED ANKESHIASH SYEIRHALEQ RIDRMSSQDV EPLSLSMSPG  120
SQSSCVTAPT QNCHPGLATM ETKKRGLLGR KKPVHRKSID TFGQRTSQYR GVSRHRWTGR  180
YEAHLWDNSC KKEGQTRKGR QVYLGGYDME EKAARAYDLA AFKYWGPSTH LNFPLKNYQV  240
EIEEMKNMNR QEYVAHLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  300
FGTQEEAAEA YDIAAIKFRG TNAVTNFDTS RYNVERIMVS SSLLSREIAR RNKEHKLTNA  360
IERKEPTQNI DRIDPSEISN SNNIDLRSTF DDTMLLDRNT TIESIDRKSV TSGGYLNHLM  420
GVETAMGKDS RKFRAHFSNA SVSLPVMSSV WNDV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-127	AP2 family protein