PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524084.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 738aa MW: 83204.1 Da PI: 4.6157

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524084.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.7	7.1e-10	585	626	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + e++++av+q+G++ + I + ++ g+t+ q+k+++ + XP_023524084.1 585 KWSKHDTERFYEAVRQFGTD-FCMIQQLFP-GKTRHQIKLKFKN 626 8*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 738 aa Download sequence
MDPFDDILSD PSVSSRTGSR FQPKIKPRPK KPTLAPQSCT HSQDKKETVS DAKSCHDGRG 60 NTKSIESSSQ LPVIEENKES EDDLLLATAR SDFISSHPPS VESAKTVDSM QLDFDSCGSI 120 LPSGSTTDDP VGVKKLTDTK NTGILNYSTP SSSTAHEATV LDQSGLGSIQ TEDRHFSDGK 180 IPEENIDIFY ELEYLDDFHN QPKNEADPAS LNQASISSED GDLDKQRLEI EERGAGADIT 240 MDTISSGDTS PSEQPACNYT TKPKIKTAEE DACMEISQPE ISDMLPPSPQ VISHDTRCMH 300 DTSIGSDFDG ILNDSSINFD GYTPVNQHTE APVNVEPLAF DSYDDILVDD FNSDDQDPSR 360 EVVFRVVRLA KENLQWNQIF LSRKRCSPKL VKKSSRAKLR GSRERRFLIN LMSQKMVLTR 420 IGISPMKPQK LAHLEEKKLQ KSLQNHLVIV KNQLGSASRL INQFPIRKPK SVLRSSPIQL 480 VGIEVNKVLL ETPEDEIDFQ KISFRDLIIY HEYKEKLEKK EASMRKSATN QRTDTAGEEI 540 FNDGEESLAS EQGRGTDDEE TPDVVDMTSA YFNYHSFMDK TPRIKWSKHD TERFYEAVRQ 600 FGTDFCMIQQ LFPGKTRHQI KLKFKNEERH HPFRLSDAVT NRATDHTQFL SLIGQLKEAA 660 NKAKQESNQD ELTENTGDEE LPELSPETNE EVAKPEGEEV QETGKEECIG EIHSPLKADE 720 NESDEDDPHR WDEYKFDF

Sequence ? help Back to Top

Protein Sequence Length: 738 aa Download sequence

MDPFDDILSD PSVSSRTGSR FQPKIKPRPK KPTLAPQSCT HSQDKKETVS DAKSCHDGRG  60
NTKSIESSSQ LPVIEENKES EDDLLLATAR SDFISSHPPS VESAKTVDSM QLDFDSCGSI  120
LPSGSTTDDP VGVKKLTDTK NTGILNYSTP SSSTAHEATV LDQSGLGSIQ TEDRHFSDGK  180
IPEENIDIFY ELEYLDDFHN QPKNEADPAS LNQASISSED GDLDKQRLEI EERGAGADIT  240
MDTISSGDTS PSEQPACNYT TKPKIKTAEE DACMEISQPE ISDMLPPSPQ VISHDTRCMH  300
DTSIGSDFDG ILNDSSINFD GYTPVNQHTE APVNVEPLAF DSYDDILVDD FNSDDQDPSR  360
EVVFRVVRLA KENLQWNQIF LSRKRCSPKL VKKSSRAKLR GSRERRFLIN LMSQKMVLTR  420
IGISPMKPQK LAHLEEKKLQ KSLQNHLVIV KNQLGSASRL INQFPIRKPK SVLRSSPIQL  480
VGIEVNKVLL ETPEDEIDFQ KISFRDLIIY HEYKEKLEKK EASMRKSATN QRTDTAGEEI  540
FNDGEESLAS EQGRGTDDEE TPDVVDMTSA YFNYHSFMDK TPRIKWSKHD TERFYEAVRQ  600
FGTDFCMIQQ LFPGKTRHQI KLKFKNEERH HPFRLSDAVT NRATDHTQFL SLIGQLKEAA  660
NKAKQESNQD ELTENTGDEE LPELSPETNE EVAKPEGEEV QETGKEECIG EIHSPLKADE  720
NESDEDDPHR WDEYKFDF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-27	MYB_related family protein