PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023524064.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 907aa MW: 101186 Da PI: 6.1352

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023524064.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56	8.9e-18	36	82	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEde+l +av + g++Wk+Ia+++ Rt+ qc +rwqk+l XP_023524064.1 36 KGHWTPEEDEILRKAVDHFKGKNWKKIAECFK-DRTDVQCLHRWQKVL 82 789**************************9.**********986 PP
2	Myb_DNA-binding	66	6.8e-21	88	134	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde +v++vk++G++ W+tIa++++ gR +kqc++rw+++l XP_023524064.1 88 KGPWSKEEDETIVELVKKYGPKKWSTIAKHLP-GRIGKQCRERWHNHL 134 79****************************.***********97 PP
3	Myb_DNA-binding	48.8	1.6e-15	140	182	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE++ l++a++ +G++ W+ + ++ gRt++ +k++w+ XP_023524064.1 140 KEAWTQEEELALIRAHQIYGNR-WAELTKFLP-GRTDNAIKNHWN 182 579*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 907 aa Download sequence
MHFPLHVKEL WKVIKPSQHL RTIPRRTSGP TRRSTKGHWT PEEDEILRKA VDHFKGKNWK 60 KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDETIV ELVKKYGPKK WSTIAKHLPG 120 RIGKQCRERW HNHLNPNINK EAWTQEEELA LIRAHQIYGN RWAELTKFLP GRTDNAIKNH 180 WNSSVKKKLD SYLASGLLSQ LQDPISVGQP NQLLASSSKV LGSGNDSGSY GMETEEISEC 240 SQDATVADSF MIDSACETLH MRKEVQLIED LGLGKEQSSE PYYHHHPAME EITCPIAEFD 300 QEVGHCLSPS EKNPSHDCRT TSNREYQCHL NEFPNISSLQ LDKAPQFEAI GTGMGESHGA 360 GSSAQNPSMV KGATASVQIE CRFISDDEFC RVLFSDSKSD QCNLSINLRK GSYVPEMCDF 420 EVPVQSLGTR KVENNHPSAS QVYDYPPGSD VQEKNLLPQS CMHIPSVVSV NNEMILLGGT 480 GSNKLFVGAR EHECVTSQEN GFVYDGGTSR PSCFHVTDNP EMQEQSTGTC SHERPKPHNE 540 NLDSGVLCYE PPRFPSLDVP FFNCDLIQAG SEMQYSPLGI RQLMMSSLNG VTPFRLWDSP 600 SHDTSPDAVL KNAAETFSST PSILKKRHRD FLSPLSDRRI DKKLETVVTS RLTENFSRLD 660 VVFKDGPEST EDKENMHCTF EKKQGTADVE ICVQSTAEIV ASGVLVEHDA NDLLLHSVDQ 720 NTLSSSARIK KRHSSENLHG PSSTPNYCKN HPESNSVAST CELPVILSAS VKKTDDDRPQ 780 IANTGIASLP GETPVKRSID SPSAWMSPWF FNSFLPGPRI DTEISIEDIG YFSSPKERSL 840 DAIGLMKQVS ERTAAACASA HEVLGNETPE TLLRGSRMKH RHCDETVLAE CRTLDFSECG 900 SPGEMGT

Sequence ? help Back to Top

Protein Sequence Length: 907 aa Download sequence

MHFPLHVKEL WKVIKPSQHL RTIPRRTSGP TRRSTKGHWT PEEDEILRKA VDHFKGKNWK  60
KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDETIV ELVKKYGPKK WSTIAKHLPG  120
RIGKQCRERW HNHLNPNINK EAWTQEEELA LIRAHQIYGN RWAELTKFLP GRTDNAIKNH  180
WNSSVKKKLD SYLASGLLSQ LQDPISVGQP NQLLASSSKV LGSGNDSGSY GMETEEISEC  240
SQDATVADSF MIDSACETLH MRKEVQLIED LGLGKEQSSE PYYHHHPAME EITCPIAEFD  300
QEVGHCLSPS EKNPSHDCRT TSNREYQCHL NEFPNISSLQ LDKAPQFEAI GTGMGESHGA  360
GSSAQNPSMV KGATASVQIE CRFISDDEFC RVLFSDSKSD QCNLSINLRK GSYVPEMCDF  420
EVPVQSLGTR KVENNHPSAS QVYDYPPGSD VQEKNLLPQS CMHIPSVVSV NNEMILLGGT  480
GSNKLFVGAR EHECVTSQEN GFVYDGGTSR PSCFHVTDNP EMQEQSTGTC SHERPKPHNE  540
NLDSGVLCYE PPRFPSLDVP FFNCDLIQAG SEMQYSPLGI RQLMMSSLNG VTPFRLWDSP  600
SHDTSPDAVL KNAAETFSST PSILKKRHRD FLSPLSDRRI DKKLETVVTS RLTENFSRLD  660
VVFKDGPEST EDKENMHCTF EKKQGTADVE ICVQSTAEIV ASGVLVEHDA NDLLLHSVDQ  720
NTLSSSARIK KRHSSENLHG PSSTPNYCKN HPESNSVAST CELPVILSAS VKKTDDDRPQ  780
IANTGIASLP GETPVKRSID SPSAWMSPWF FNSFLPGPRI DTEISIEDIG YFSSPKERSL  840
DAIGLMKQVS ERTAAACASA HEVLGNETPE TLLRGSRMKH RHCDETVLAE CRTLDFSECG  900
SPGEMGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.2	0.0	MYB family protein