PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_023523845.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
|
||||||||
Family | Whirly | ||||||||
Protein Properties | Length: 239aa MW: 26671.7 Da PI: 10.1265 | ||||||||
Description | Whirly family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Whirly | 175.4 | 1.2e-54 | 63 | 198 | 2 | 137 |
Whirly 2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkv 96 vyk+ka +++ + +ptf++l+sg+l+++r+G++ll++ +a++erkydW kkq f+ls+tev++l++l++++sceffhdp++ +s +G+vrk+l + XP_023523845.1 63 VYKGKAGVSMFPCLPTFTKLESGSLVIDRRGSILLTFFPAIGERKYDWTKKQFFSLSPTEVGTLINLGPRDSCEFFHDPGMLSSTAGQVRKSLTI 157 9********************************************************************************************** PP Whirly 97 ePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137 + ++dG G+f++l+v + ++e +svP + +ef+v++++ XP_023523845.1 158 KAHADGNGYFISLNVVDNTKSTKEFLSVPFTAGEFSVMKTA 198 ******************99999999*************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 239 aa Download sequence |
MLKLQRWLSR NQLFEQVVCK KAGHVDHAFG SHPFSSGVGI PGQKFTHTVP KNENDRVYAA 60 YNVYKGKAGV SMFPCLPTFT KLESGSLVID RRGSILLTFF PAIGERKYDW TKKQFFSLSP 120 TEVGTLINLG PRDSCEFFHD PGMLSSTAGQ VRKSLTIKAH ADGNGYFISL NVVDNTKSTK 180 EFLSVPFTAG EFSVMKTACS FALPHILGWD RLTKPSLGME KGFQPNKVNR EGLSLEWKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G71260.1 | 3e-77 | Whirly family protein |