PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023523747.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | MYB | ||||||||
Protein Properties | Length: 162aa MW: 18495.9 Da PI: 10.7682 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.2 | 1.4e-16 | 12 | 57 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_023523747.1 12 RGHWRPAEDAKLKEVVALYGPQNWNLIAEKLD-GRSGKSCRLRWFNQ 57 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 57.6 | 2.9e-18 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++T eE+e+l +a++ +G++ W+ Iar+++ gRt++ +k++w+ XP_023523747.1 64 RGAFTHEEEERLMQAHRVHGNK-WAMIARMFP-GRTDNGVKNHWHV 107 89********************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 162 aa Download sequence |
MNSGTNAKGC ARGHWRPAED AKLKEVVALY GPQNWNLIAE KLDGRSGKSC RLRWFNQLDP 60 RINRGAFTHE EEERLMQAHR VHGNKWAMIA RMFPGRTDNG VKNHWHVIMA RKCRHHFAAG 120 RRRRRTTTSD EDSATNEPPS FMDRSVEPAL FFDFLGVGGG PT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 124 | RKCRHHFAAGRRRR |
2 | 121 | 126 | RRRRRT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 3e-67 | MYB family protein |