PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523671.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 329aa MW: 36172.8 Da PI: 8.4911

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523671.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	126.4	1.1e-39	50	126	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsrfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023523671.1 50 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 126 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence
MYLRLRGIGN MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQVPSC MVDGCSSDLS 60 KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRFHSL VEFDDRKRSC RKRLDGHNRR 120 RRKPQPATMT LNAGRFLYGN QGPRFLPFGN QLLSASNDVS SSWIGMIKPE SNAPLCSGNS 180 QFDFGDRRKS MLLPGSLACD YKEKQLAISC IPIGLLPKSS DAHPFLDVES SNGENVQKVF 240 GNGSDQFFNS DCALSLLSTP VEPGEINLSS MSQSNLITPA HFIHSDGLGL ESDPVNSGMV 300 SDGSSHGNIR CYPTFQDGLA GSSVDLFRY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	106	123	RKRSCRKRLDGHNRRRRK
2	106	124	RKRSCRKRLDGHNRRRRKP
3	107	125	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	3e-46	SBP family protein