PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023523650.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | SBP | ||||||||
Protein Properties | Length: 372aa MW: 41402.3 Da PI: 8.5385 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 69.5 | 6.5e-22 | 50 | 97 | 2 | 49 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsr+ XP_023523650.1 50 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRW 97 **********************************************97 PP | |||||||
2 | SBP | 44.8 | 3.2e-14 | 138 | 169 | 47 | 78 |
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023523650.1 138 CRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 169 59***************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence |
MYLRLRGIGN MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQVPSC MVDGCSSDLS 60 KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRWLNQ CWMQIFVRYL HFVFLLLLIF 120 VWLVPFLAFV SVPLTCACRF HSLVEFDDRK RSCRKRLDGH NRRRRKPQPA TMTLNAGRFL 180 YGNQGPRFLP FGNQLLSASN DVSSSWIGMI KPESNAPLCS GNSQFDFGDR RKSMLLPGSL 240 ACDYKEKQLA ISCIPIGLLP KSSDAHPFLD VESSNGENVQ KVFGNGSDQF FNSDCALSLL 300 STPVEPGEIN LSSMSQSNLI TPAHFIHSDG LGLESDPVNS GMVSDGSSHG NIRCYPTFQD 360 GLAGSSVDLF RY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 149 | 166 | RKRSCRKRLDGHNRRRRK |
2 | 149 | 167 | RKRSCRKRLDGHNRRRRKP |
3 | 150 | 168 | RKRSCRKRLDGHNRRRRKP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 7e-38 | SBP family protein |