PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523642.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

SBP

Protein Properties

Length: 372aa MW: 41402.3 Da PI: 8.5385

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523642.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	69.5	6.5e-22	50	97	2	49
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 C v+gC++dls++++yhrrhkvCe hsk+p+v++ g+eqrfCqqCsr+ XP_023523642.1 50 CMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRW 97 **********************************************97 PP
2	SBP	44.8	3.2e-14	138	169	47	78
SSEEETTT--SS--S-STTTT-------S--- CS SBP 47 srfhelsefDeekrsCrrrLakhnerrrkkqa 78 rfh+l efD++krsCr+rL++hn+rrrk+q+ XP_023523642.1 138 CRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQP 169 59***************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MYLRLRGIGN MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQVPSC MVDGCSSDLS 60 KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRWLNQ CWMQIFVRYL HFVFLLLLIF 120 VWLVPFLAFV SVPLTCACRF HSLVEFDDRK RSCRKRLDGH NRRRRKPQPA TMTLNAGRFL 180 YGNQGPRFLP FGNQLLSASN DVSSSWIGMI KPESNAPLCS GNSQFDFGDR RKSMLLPGSL 240 ACDYKEKQLA ISCIPIGLLP KSSDAHPFLD VESSNGENVQ KVFGNGSDQF FNSDCALSLL 300 STPVEPGEIN LSSMSQSNLI TPAHFIHSDG LGLESDPVNS GMVSDGSSHG NIRCYPTFQD 360 GLAGSSVDLF RY

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MYLRLRGIGN MGDGSMDDMK GTRVSLIESS ASRLMKRSRA PGSGPQVPSC MVDGCSSDLS  60
KCRDYHRRHK VCELHSKTPK VTICGQEQRF CQQCSRWLNQ CWMQIFVRYL HFVFLLLLIF  120
VWLVPFLAFV SVPLTCACRF HSLVEFDDRK RSCRKRLDGH NRRRRKPQPA TMTLNAGRFL  180
YGNQGPRFLP FGNQLLSASN DVSSSWIGMI KPESNAPLCS GNSQFDFGDR RKSMLLPGSL  240
ACDYKEKQLA ISCIPIGLLP KSSDAHPFLD VESSNGENVQ KVFGNGSDQF FNSDCALSLL  300
STPVEPGEIN LSSMSQSNLI TPAHFIHSDG LGLESDPVNS GMVSDGSSHG NIRCYPTFQD  360
GLAGSSVDLF RY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	149	166	RKRSCRKRLDGHNRRRRK
2	149	167	RKRSCRKRLDGHNRRRRKP
3	150	168	RKRSCRKRLDGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-38	SBP family protein