PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023523434.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 698aa    MW: 77235.2 Da    PI: 6.7655
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023523434.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-202378156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    r++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_023523434.1 23 RKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 78
                    789999***********************************************998 PP
2START172.72.4e-542104342205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a  a+ el+++ + +ep+W+ks+    + ++ +++ q f++++v      +++e++r+sgvv+ ++a+lv  ++d++ +W+e ++    +a t+
  XP_023523434.1 210 VATNAMGELLRLCQTNEPLWMKSRsdgrDVLDLETYEQAFPRANVplenlhFRTEVSRDSGVVIVNSATLVDMFMDSN-KWSELFPtivsSARTI 303
                     7788999*****************9999999***********999*********************************.**************** PP

                     EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     evissg       g lqlm+ elq+lsplvp R f+++Ry++q ++g+w++vdvS +++   +   s   +++ pSg+li++++ng+skvtw+eh
  XP_023523434.1 304 EVISSGmlgshhnGSLQLMYLELQLLSPLVPtRHFYILRYSQQIEQGTWAVVDVSYNVTGGSQ-MVSHSQCRRSPSGCLIQDMPNGYSKVTWIEH 397
                     *********************************************************999988.577777889********************** PP

                     EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     v+++++   hwl+r l++sgla+ga +w+atlqr  e
  XP_023523434.1 398 VEVEDKGStHWLFRDLIHSGLAFGAERWLATLQRTSE 434
                     ***999888************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    
MEFGTGGGGG WDNDSSSDPR RSRKRYHRHT ANQIQRLEAM FKECPHPDEK QRLQLSRELG  60
LAPRQIKFWF QNRRTQMKAQ HERADNSALR AENDKIRCEN IAIREALKNV ICPSCGGPPL  120
HDAYFDEHKL RMENAHLKEE LDRVSSMAAK YIGRPISQPS HFSSLELSMS SFGSHEMGCS  180
SLDLDLLPAS SSSVLPIHVS NMDKTLMSEV ATNAMGELLR LCQTNEPLWM KSRSDGRDVL  240
DLETYEQAFP RANVPLENLH FRTEVSRDSG VVIVNSATLV DMFMDSNKWS ELFPTIVSSA  300
RTIEVISSGM LGSHHNGSLQ LMYLELQLLS PLVPTRHFYI LRYSQQIEQG TWAVVDVSYN  360
VTGGSQMVSH SQCRRSPSGC LIQDMPNGYS KVTWIEHVEV EDKGSTHWLF RDLIHSGLAF  420
GAERWLATLQ RTSERFACSM VTSSSSQDLG GVIPSLEGRR SMMKLAQRMV NNFCASISTS  480
HGHRWTTLSG TDEVGVYVSV HKSMDPGQRN GVALSAATTI WLPVPPQTIF NFFKNDRTRS  540
QWDVLSDGNP VQEVAHITNG SHPGNCISVL RAMNSTQNNM LILQESCIDS SGSLVVYCPV  600
DLPAMNLAMS GEDPSNIPLL PSGFAILPDG RQDQGEGASS SSDVHNRSGG SLVTVAFQIL  660
VSSLPSGKLN LESVTTVNNL ISTTVHQIKT ALNCHSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein