PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023523374.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 287aa MW: 31757.7 Da PI: 8.3821

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023523374.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	59.1	1e-18	14	59	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+ +G ++W++I++ + gR++k+c++rw + XP_023523374.1 14 KGPWSPEEDELLRRLVHSYGARNWSLISKSIS-GRSGKSCRLRWCNQ 59 79****************************.*********985 PP
2	Myb_DNA-binding	48.6	1.8e-15	68	110	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed+ +++a+ ++G++ W++Iar ++ gRt++ +k++w++ XP_023523374.1 68 PFTPYEDDTIIQAHSRFGNK-WAAIARLLN-GRTDNAIKNHWNST 110 79****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence
MATAGGTKAV DRIKGPWSPE EDELLRRLVH SYGARNWSLI SKSISGRSGK SCRLRWCNQL 60 SPEVEHHPFT PYEDDTIIQA HSRFGNKWAA IARLLNGRTD NAIKNHWNST LKRKCSSSIA 120 DDFKHHPPKR SASVGAAPTT VASPFYFNHS SPSDSDLSDS SLPGMSSSQV CKSFSPDALI 180 SQSDQPPMET STDPLTSLTL CPPGSDSSEV PKLASEPDQA PQQPVQSSDK LRIESKFFST 240 EFLAVMQEMI RKEVHNYMSG MEQKGLCLQT EAVRNAIVKR IVINKRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	2e-61	MYB family protein