PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023522936.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family bHLH
Protein Properties Length: 302aa    MW: 33294.9 Da    PI: 9.223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023522936.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.7e-061902281154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  XP_023522936.1 190 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 228
                     5778999**********998.....8****************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    
MRSEKGINRG FSLDHHHQQF TSPSHYSSTD SAVTSFPIDT TTAATTLYGN STTLLQGLLG  60
GEQQQVSAAA SMNYPYNSHY GINSNEFMAA GASWSPSTKL PQFLRNSTPH NQLQFSNNTA  120
FWNASDMKDV RPSYVPTSYN TIPEKSKNRS EIGDSMSVGK KSGNDGNQQQ SGGGKRGRNE  180
SPSTLPAFKV RKEKMGDRIT ALQQLVSPFG KTDTASVLSE AIEYIKFLHE QVSVLSTPYL  240
KSGVAVQQQQ QQKWCEKRKE GEGKEEDLRS RGLCLVPVSS TFPVTHETTV DFWTPSFGGT  300
FR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.15e-58bHLH family protein