PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023522907.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB_related

Protein Properties

Length: 671aa MW: 74722 Da PI: 8.6959

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023522907.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	573	622	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_023522907.1 573 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 622 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 671 aa Download sequence
MVLQKRLDYG FHDYQVPTMP RATRSARKRS ICKKGTEGSQ MRAFDLLATV ADKLLHGTEG 60 PTTNTIDTST EKDRYTVVDK ELNVDSLCKV EPSQGFVSEL VLSGHDKKCD SKDCFPQHNE 120 HVEHSPPLTS EVTNFDKNNN EMGNLASEVR VGSPSSKESD NCELDGKNEV IVKYELHKTE 180 EVLTRTQDRG DDSCKREDPV IWDQKAHVLG NSVSCGKMTH DKQIVQNSYF ATQNNVKVVD 240 RDDDENSSGC THPVSSIKSF RTVPSSRDRR IKKVSASKSW KVVPRYRDES LSKTDGVWKS 300 MSCCKSSHDS CRPQKSQMNI PFKKRKFFDC SSSVSNSDGG INSEGISDST GKVAKTDSSG 360 RSCSVSGHGH HKSFQSKDSH VKIRIKSFRV PELFIEIAET ATVGSLKRTV MEAVTAILGG 420 GLRVGVLLQG KKVRDDNKTL FQTGISHDNQ LDSLGFALEP NPSRMPLVLC QEDSPPCILP 480 CDAPEPLTRY SPDASADHPG SSNVLPEPHG DSLGNFIESD HDSAPSPTDT SNHKSTVDSK 540 ALVTVPAMTA EAISVVPMHR KSKRSEVAQR RIRRPFSVAE VEALVQAVEK LGTGRWRDVK 600 LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLTAH AYWSKQQAKY 660 QLKRQPERFL L

Sequence ? help Back to Top

Protein Sequence Length: 671 aa Download sequence

MVLQKRLDYG FHDYQVPTMP RATRSARKRS ICKKGTEGSQ MRAFDLLATV ADKLLHGTEG  60
PTTNTIDTST EKDRYTVVDK ELNVDSLCKV EPSQGFVSEL VLSGHDKKCD SKDCFPQHNE  120
HVEHSPPLTS EVTNFDKNNN EMGNLASEVR VGSPSSKESD NCELDGKNEV IVKYELHKTE  180
EVLTRTQDRG DDSCKREDPV IWDQKAHVLG NSVSCGKMTH DKQIVQNSYF ATQNNVKVVD  240
RDDDENSSGC THPVSSIKSF RTVPSSRDRR IKKVSASKSW KVVPRYRDES LSKTDGVWKS  300
MSCCKSSHDS CRPQKSQMNI PFKKRKFFDC SSSVSNSDGG INSEGISDST GKVAKTDSSG  360
RSCSVSGHGH HKSFQSKDSH VKIRIKSFRV PELFIEIAET ATVGSLKRTV MEAVTAILGG  420
GLRVGVLLQG KKVRDDNKTL FQTGISHDNQ LDSLGFALEP NPSRMPLVLC QEDSPPCILP  480
CDAPEPLTRY SPDASADHPG SSNVLPEPHG DSLGNFIESD HDSAPSPTDT SNHKSTVDSK  540
ALVTVPAMTA EAISVVPMHR KSKRSEVAQR RIRRPFSVAE VEALVQAVEK LGTGRWRDVK  600
LRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLTAH AYWSKQQAKY  660
QLKRQPERFL L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-125	MYB_related family protein