PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023522738.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 244aa MW: 26579 Da PI: 6.3137 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.9 | 3e-17 | 193 | 244 | 2 | 53 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 rk+ +++keq Le+ F+++++++ ++++ LAk+l+L rqV vWFqNrRa XP_023522738.1 193 RKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRA 244 788899*********************************************8 PP | |||||||
2 | HD-ZIP_I/II | 76.7 | 4e-25 | 193 | 244 | 1 | 52 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRA 52 +kk+rlskeq+++LE+sF+++++L+p++K++la++L+l+prqv+vWFqnrRA XP_023522738.1 193 RKKLRLSKEQSAFLEQSFKQHSTLNPKQKAALAKQLNLRPRQVEVWFQNRRA 244 69*************************************************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MALGFCVGLG HGHGHGYGYG SGSGSGSGFG RVHDEXGSGS GFGRVHDEDG RDVKDEDEDD 60 DEKTIPGSGY GLDPPVQLDL LPLSPVPRSS HQSSSTLPFS CLSHRLMPEL GCTDKVLDVN 120 RPPALAAAVE MIPVEETEDK SPNSTVTSFQ MDFGVRNGGG RGRTRSKRSS DMEMETERSS 180 SRNSDDEENA SARKKLRLSK EQSAFLEQSF KQHSTLNPKQ KAALAKQLNL RPRQVEVWFQ 240 NRRA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 163 | 168 | RTRSKR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 4e-29 | HD-ZIP family protein |