PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023522601.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB_related
Protein Properties Length: 189aa    MW: 21463 Da    PI: 5.0986
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023522601.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.78.5e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT +E+  l+ +v ++G g W+tI +          R+  ++k++w++
   XP_023522601.1  5 KQKWTNQEEAALKAGVVKHGAGKWRTILKDPEfssvlYLRSNVDLKDKWRN 55
                     79***********************************88***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    
MGAPKQKWTN QEEAALKAGV VKHGAGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNMSVMA  60
NGWGSREKAR LALKRLHAPK KDENILARSV AVQSEDELPE AKSVSLSSDI KLIAGPKRSN  120
VRKEEEEEEE EDDDEEEETE AERTERDARY DCHRLDNLII EAITTLREPG GSNKTKITSY  180
IEVVFLSPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.13e-62MYB_related family protein