PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023521919.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | GRAS | ||||||||
Protein Properties | Length: 133aa MW: 15722 Da PI: 6.2546 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 125.6 | 5.9e-39 | 4 | 130 | 247 | 373 |
GRAS 247 dhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklll 341 + n++ F +rf eal +ys+lfd++ea++pr+ er+ E+e+lgr+ivnv+aceg er+er et+++W+ r ++aGFk+vpl+++ k+++ ++ XP_023521919.1 4 SFNTPFFNTRFKEALFHYSSLFDMYEATMPRDIPERHLCEKEILGRDIVNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQNLLKNVEKIV 98 67999****************************************************************************************** PP GRAS 342 rkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 ++ + + + ++++ ++++gWk+r ++++S+W XP_023521919.1 99 NTEYHQDFVIDQDGSWMLQGWKGRIIYALSCW 130 **99888************************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence |
MNGSFNTPFF NTRFKEALFH YSSLFDMYEA TMPRDIPERH LCEKEILGRD IVNVIACEGL 60 ERVERPETYK QWQVRNTRAG FKQVPLDQNL LKNVEKIVNT EYHQDFVIDQ DGSWMLQGWK 120 GRIIYALSCW VVA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07520.1 | 4e-56 | GRAS family protein |