PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023520669.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 379aa    MW: 40740.9 Da    PI: 8.6498
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023520669.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.71.7e-12327126
                    --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                    yk e+Cr+f+r G C+yG+rCkF H+
  XP_023520669.1  3 YKKEPCRNFQR-GSCQYGERCKFLHV 27
                    9**********.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MHYKKEPCRN FQRGSCQYGE RCKFLHVTQQ PQKPSNFGSG MQTSSQPQQK PNPFGFGVHS  60
TGQSKAAVDS GSKQNQYKLY DNKWTRSSTP TGNAPSRKPD NQPASANHIC TDGESCKRQI  120
AEDFQNERPL WKLTCYGHSK SQPCDIVGDV SYEELRAIAY DEAKRGISLQ SIVERERNLL  180
NSKLSEFESL LHKPYVTPLN RASGNQSSLS GTNSLSVQPS SQNSGPPSLS SFSQLGASLN  240
TGFGARPSNP PNNAFGQPVQ FSSSPENSST FGATNFPSTN AGAVGGVFGS QVPSQTFGNS  300
TLSGFNNSGI TNAGSNLLSS PAIPTKFPST DAGGQILSNA QLVNKLQQEN SSVDVSIWLK  360
EKWVPGEIPE VAPPDAVVQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.28e-76C3H family protein