PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520556.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

Trihelix

Protein Properties

Length: 639aa MW: 70899.4 Da PI: 5.3596

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	95.6	4.8e-30	80	164	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+laL+++r++m++++r++ lk+plW+evs+k+ e g+ r++k+Ckek+en++k+yk++keg+++r ++ +t+++f+qlea XP_023520556.1 80 RWPRQETLALLKIRSDMDSAFRDATLKGPLWDEVSRKLGEMGYARNAKKCKEKFENVQKYYKRTKEGRGGR--GDGKTYKFFTQLEA 164 8******************************************************************97..77778*****85 PP
2	trihelix	107.7	7.5e-34	436	521	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+kqevlaLi++r +e+r+++ k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr e+s+tcpyfd+l+a XP_023520556.1 436 RWPKQEVLALIKLRGGLESRYQEMGPKGPLWEEISAGMNRLGYKRSAKRCKEKWENINKYFKKVKESNKKR-REDSKTCPYFDELDA 521 8*******************************************************************8.78999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MEGVGGGSGS ELFGVTPPLT VDVVSDSQPV EAASPISSRP PASSSLNYEE LIRGGGQMAI 60 DDDALVGEDA GGGGSSAGNR WPRQETLALL KIRSDMDSAF RDATLKGPLW DEVSRKLGEM 120 GYARNAKKCK EKFENVQKYY KRTKEGRGGR GDGKTYKFFT QLEALHNAAS QNVASSGFGI 180 SNPTPISAVK ISQTPMGIFS PPPTIAAPMG VSFSSDTSSS STEEEEEEEE EEEEMGFDVE 240 GEPSSVAGSS RKRRRRRGAV KGKSGGRRRR HKMMMGFFEG LMKEVVQKQE AMQQRFLEAI 300 ERREEERMIR EETWKRQEMG RLREEQEKMA QERTIAGSRD AAIIAFLQKF TGQTIQLPSV 360 NISPSAPQQH YDLSVPVPAP TPVAMPLSPV PPPPPFKTQP PSNTMPFMDH PISISNQESS 420 SHGGRGDGPS EPISSRWPKQ EVLALIKLRG GLESRYQEMG PKGPLWEEIS AGMNRLGYKR 480 SAKRCKEKWE NINKYFKKVK ESNKKRREDS KTCPYFDELD ALYRKKIPTA GGSDGGASFS 540 DTAKLQQTHI QMPHTTPAEE QPPPPPPPPP PPPPSPPPTK PEDIVNELME LQNLYDVDQV 600 DDDDDDNDDN DNTREEKRRN MDYKMEFQTS EFQSMAVVQ

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MEGVGGGSGS ELFGVTPPLT VDVVSDSQPV EAASPISSRP PASSSLNYEE LIRGGGQMAI  60
DDDALVGEDA GGGGSSAGNR WPRQETLALL KIRSDMDSAF RDATLKGPLW DEVSRKLGEM  120
GYARNAKKCK EKFENVQKYY KRTKEGRGGR GDGKTYKFFT QLEALHNAAS QNVASSGFGI  180
SNPTPISAVK ISQTPMGIFS PPPTIAAPMG VSFSSDTSSS STEEEEEEEE EEEEMGFDVE  240
GEPSSVAGSS RKRRRRRGAV KGKSGGRRRR HKMMMGFFEG LMKEVVQKQE AMQQRFLEAI  300
ERREEERMIR EETWKRQEMG RLREEQEKMA QERTIAGSRD AAIIAFLQKF TGQTIQLPSV  360
NISPSAPQQH YDLSVPVPAP TPVAMPLSPV PPPPPFKTQP PSNTMPFMDH PISISNQESS  420
SHGGRGDGPS EPISSRWPKQ EVLALIKLRG GLESRYQEMG PKGPLWEEIS AGMNRLGYKR  480
SAKRCKEKWE NINKYFKKVK ESNKKRREDS KTCPYFDELD ALYRKKIPTA GGSDGGASFS  540
DTAKLQQTHI QMPHTTPAEE QPPPPPPPPP PPPPSPPPTK PEDIVNELME LQNLYDVDQV  600
DDDDDDNDDN DNTREEKRRN MDYKMEFQTS EFQSMAVVQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	251	255	RKRRR
2	251	257	RKRRRRR
3	251	269	RKRRRRRGAVKGKSGGRRR
4	251	270	RKRRRRRGAVKGKSGGRRRR
5	252	257	KRRRRR
6	252	271	RKRRRRRGAVKGKSGGRRRR
7	253	272	RKRRRRRGAVKGKSGGRRRR
8	254	273	RKRRRRRGAVKGKSGGRRRR
9	255	274	RKRRRRRGAVKGKSGGRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	3e-59	Trihelix family protein