PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520534.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 171aa MW: 19006.7 Da PI: 10.4746

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520534.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	2.9e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed llv +++q+G g+W++ +++ g+ R++k+c++rw +yl XP_023520534.1 15 KGPWTAREDALLVSYIQQHGEGHWRALPKKAGLLRCGKSCRLRWMNYL 62 79****************************99**********97 PP
2	Myb_DNA-binding	56.5	6.2e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T++Ed+l+++++++lG++ W++Ia +++ gRt++++k++w+++l XP_023520534.1 68 RGNITPDEDDLIIKLHTLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113 7999****************.*****.**********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 171 aa Download sequence
MGRTSSCCSK GGLHKGPWTA REDALLVSYI QQHGEGHWRA LPKKAGLLRC GKSCRLRWMN 60 YLRPDIKRGN ITPDEDDLII KLHTLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKLAIT 120 KDNAGEAKKE KIITTNSANG ETSDSRKPAR VSNGDNSSSG MEVAARLIGW L

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-64	MYB family protein