PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520465.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

CO-like

Protein Properties

Length: 344aa MW: 39409.3 Da PI: 7.1471

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520465.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.8	1.1e-08	16	56	3	38
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 +r C+ + +k+++++C ++ +lC++C + H+ H+ XP_023520465.1 16 ARACDSCFRKRARWYCAADDAFLCQSCDSV-HSAnplarrHQ 56 578**************************9.95566666676 PP
2	CCT	68	2.5e-23	288	331	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_023520465.1 288 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 331 9*****************************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MSTKSSIANA VGGKTARACD SCFRKRARWY CAADDAFLCQ SCDSVHSANP LARRHQRLRL 60 NSPTSSDSKP PSPSWVSGFT RKPRTPRPPP RPKSDDLLSN PSFSLVPEAD DATSHEDNEE 120 DHLLYRVPTF DPFLPSDDLD LADFAADLER QCFDMEGLGL VKVEDLHEQQ EADYCRAQHQ 180 FEAQMDLMRE PFELIPVVDV KNERQEDCAE ETEDESKTQR KRRVTLRLDC EAVIAAWGDD 240 KSPWTTGERP DLDPDQPWPH FMAFCEVRNR QGCGEYGMST VAMGDGGREA RVSRYREKRR 300 TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR TAFTHPVLPI VSIK

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MSTKSSIANA VGGKTARACD SCFRKRARWY CAADDAFLCQ SCDSVHSANP LARRHQRLRL  60
NSPTSSDSKP PSPSWVSGFT RKPRTPRPPP RPKSDDLLSN PSFSLVPEAD DATSHEDNEE  120
DHLLYRVPTF DPFLPSDDLD LADFAADLER QCFDMEGLGL VKVEDLHEQQ EADYCRAQHQ  180
FEAQMDLMRE PFELIPVVDV KNERQEDCAE ETEDESKTQR KRRVTLRLDC EAVIAAWGDD  240
KSPWTTGERP DLDPDQPWPH FMAFCEVRNR QGCGEYGMST VAMGDGGREA RVSRYREKRR  300
TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR TAFTHPVLPI VSIK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	299	315	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	2e-34	CO-like family protein