PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023520359.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 543aa MW: 59578.4 Da PI: 5.8939

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023520359.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.8	1.4e-11	358	400	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L XP_023520359.1 358 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 400 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence
MLSRAGNVLW MEEDSKEEDS ASWTKNNTDT HLTHPANSSV FDNNHQITSL STFKSMLDVE 60 DDWCINGNAL HNHTHHADIN DITFSQNFTD PPDNLLLPSA DSSSSCSPSS SVFNNIDPSQ 120 LRFFLPPTRT FSSLHKPISN NPLDHPFDLG AEFGFLDVQA SNSSTLLNNG GGLLTGFTDL 180 SPTSQMNTPN LCLASQLTEN CSGLAGFQSF DDNLGNALLL NRSKLLRPLE SFPSVGAQPT 240 LFQKRAALRK SLADKGSNLG GLSPDGGWFS NRIDGGVGKT EMGDENGKKR KMIYADEFQD 300 TSIDTSRFNY DSDDFTEHNN SKLDESGRNV GNTSNANSTV TGGDQKGKKK GLPAKNLMAE 360 RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIEYLKEL LQRINDLHNE LEFAPPGTAL 420 TPSTSFHPLT PTPSSLSSRI KEELCPSSFP SPNGQQPARV EVRVRQGRAV NIHMFCSRRP 480 GLLLSTVRAL DNLGLDIQQA VISCFNGFAM DIFRAEQCSE EQDVHPEQIK AILLDSVGLN 540 GAT

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence

MLSRAGNVLW MEEDSKEEDS ASWTKNNTDT HLTHPANSSV FDNNHQITSL STFKSMLDVE  60
DDWCINGNAL HNHTHHADIN DITFSQNFTD PPDNLLLPSA DSSSSCSPSS SVFNNIDPSQ  120
LRFFLPPTRT FSSLHKPISN NPLDHPFDLG AEFGFLDVQA SNSSTLLNNG GGLLTGFTDL  180
SPTSQMNTPN LCLASQLTEN CSGLAGFQSF DDNLGNALLL NRSKLLRPLE SFPSVGAQPT  240
LFQKRAALRK SLADKGSNLG GLSPDGGWFS NRIDGGVGKT EMGDENGKKR KMIYADEFQD  300
TSIDTSRFNY DSDDFTEHNN SKLDESGRNV GNTSNANSTV TGGDQKGKKK GLPAKNLMAE  360
RRRRKKLNDR LYMLRSVVPK ISKMDRASIL GDAIEYLKEL LQRINDLHNE LEFAPPGTAL  420
TPSTSFHPLT PTPSSLSSRI KEELCPSSFP SPNGQQPARV EVRVRQGRAV NIHMFCSRRP  480
GLLLSTVRAL DNLGLDIQQA VISCFNGFAM DIFRAEQCSE EQDVHPEQIK AILLDSVGLN  540
GAT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	348	366	KKKGLPAKNLMAERRRRKK
2	360	367	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-107	bHLH family protein