PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519657.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family HD-ZIP
Protein Properties Length: 333aa    MW: 37067.7 Da    PI: 4.3346
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519657.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.42.8e-19105158356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++++q++ Le+ Fe ++++  e++ +LAk lgL+ rqV +WFqNrRa++k
  XP_023519657.1 105 KKRRLSADQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWK 158
                     56689************************************************9 PP
2HD-ZIP_I/II132.22e-42104195192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     ekkrrls++qv++LE+sFe+e+kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y +lk++ e+L ke+++L++e+ 
  XP_023519657.1 104 EKKRRLSADQVRFLEKSFETENKLEPERKVQLAKDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALQSSYGNLKADYENLLKEKDSLKAEIV 195
                     69**************************************************************************************9985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    
MAGRRVYGGG DDGGSISGVS SNHSVLLQNR GGSFASEPLS ALFLSGSSSS TSPSLLDCSG  60
IGSRSMMSFE DIRGGNGSNQ SFFCPLDNED NGDEDLDDYF HHPEKKRRLS ADQVRFLEKS  120
FETENKLEPE RKVQLAKDLG LQPRQVAIWF QNRRARWKTK QLEKDYEALQ SSYGNLKADY  180
ENLLKEKDSL KAEIVVLTDK LILKDKERSN SVVSEDDKFG EEPPQNLVDE ASKSSKLGCK  240
QEDMSSVKSD IFDSDSPHYT DGVHSSLLDP GDSSYIFDPD QSDLSQDEED NLGKNLLPPC  300
IFPKLEDVDY SDPPTSSCNF VFPIEDNALW SWS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-46HD-ZIP family protein