PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023519466.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MYB
Protein Properties Length: 311aa    MW: 34649.8 Da    PI: 7.7837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023519466.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.9e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++q+G+g+W++++   g+ R+ k+c++rw +yl
   XP_023519466.1 15 KGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLLRCSKSCRLRWTNYL 62
                     79******************************99************97 PP
2Myb_DNA-binding48.52e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T  E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
   XP_023519466.1  68 RGNFTDHEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    
MMGRPPCCDK VGVKKGPWTP EEDIILVSYI QQHGPGNWRS VPTNTGLLRC SKSCRLRWTN  60
YLRPGIKRGN FTDHEEKMII HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKKKLKRV  120
QSGPDGGAQD RFTPSQTSTL SRGQWERRLQ TDIHTAKRAL CEALSLDKQN PFGIIEDSKP  180
QTNNLILQSP PPPTTTTTTS AYASSAENIA RLLENWMKKS PEKSSEITTQ ACVSEGSQSA  240
TNGNNSPDGP TLDDSSCFLN FNNTSSTSTA NQEVPLTFLE KWLFDDASLG NVHTDQDLIS  300
VSLEPQTEGL F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.11e-109MYB family protein