PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023519255.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 251aa MW: 28656.4 Da PI: 10.1318

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023519255.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.5	2.7e-31	35	84	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+ XP_023519255.1 35 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 84 79***********************************************8 PP
2	K-box	105.1	8.5e-35	108	199	9	100
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ea+++ ++qe+akL+++i n+q+ +RhllGe+++sLs+k+L++L+ +Lek++++iRs+Knell+++ie++ k+e el+++n+ +r+k++e XP_023519255.1 108 VSEANTQFYEQESAKLRAQIGNMQNLNRHLLGESIGSLSVKDLKSLQVKLEKGITRIRSRKNELLFAEIEYMHKREIELHNTNQLIRAKIAE 199 789**************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence
MGYPDEMQKQ KQKQKQAGEE QSQRRRSGRG KIEIKRIENT TNRQVTFCKR RNGLLKKAYE 60 LSVLCDAEVA LIVFSTRGRL YEYANNSVRA TISRYKKACS DPLSAGFVSE ANTQFYEQES 120 AKLRAQIGNM QNLNRHLLGE SIGSLSVKDL KSLQVKLEKG ITRIRSRKNE LLFAEIEYMH 180 KREIELHNTN QLIRAKIAET ERRQQNRSGN NSIGARGGGE GEGEGCVGPN LEGNEQYYFP 240 HQNHHISLQL I

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18960.1	8e-96	MIKC_MADS family protein