PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023519079.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | ARF | ||||||||
Protein Properties | Length: 883aa MW: 97693.1 Da PI: 6.3301 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.8 | 2e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD v+F ++++ XP_023519079.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSMQPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFI--WNEK 218 99*****************************9445444.38************************************************..8899 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_023519079.1 219 NQLLLGIRRA 228 999****997 PP | |||||||
2 | Auxin_resp | 118.6 | 5.2e-39 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F++++nPras+seFv+++ k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k XP_023519079.1 253 AAHAAATNSRFTIFFNPRASPSEFVIPLTKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336 79*********************************9789******************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 883 aa Download sequence |
MRLSAAGFSP QPPEGERRVL NSELWHACAG PLVSLPAVGT RVVYFPQGHS EQVAASTNKE 60 VDAQIPNYPS LPPQLICQLH NLTMHADAET DEVYAQMTLQ PLSAQELKEA YLPAELGSPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSM QPPAQELIAR DLHDNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDA VLFIWNEKNQ LLLGIRRASR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFFNPR ASPSEFVIPL TKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPTG LPSFGIKDSD LGMNSPFMWL RGDNCLNFQG NGVSPWMQPR 420 LDTSMMAMQP DMYQAMATAA LQEMRAIDYS KIAPASVLQF QQSQGLPCQS SSLMQPQMMH 480 QSQPQQAFLQ SIQENQQHHL QPQLQPQQFN NQQQQPRQPQ PPQLDHQQIP CTIPAAISQF 540 ASCSQSQLPS LQTIPSLCQQ PSFSDSNCNP VTTTVSPLHS LAGSSSVQDE SSQLLNLQRA 600 NSIIPSAGWP AKRAAIDPLT TGASQYFLPQ GEILGTSQSS IPQNTVALPP FPGRECSNGD 660 RDDGSDPQNH VLFGVNIESS SLLMQNGASH LRGVGNDSAS TTLPFSSNYM STAGTDFSVN 720 PTMTSSNCID ESGFLQSHEN VGQVNHPPNG TFVKVHKSGT YSRSLDITKF NSYPELRSEL 780 ACMFGLEGEL EDPLRSGWQL VFVDRENDVL LLGDGPWPEF VSSVWCIKIL SPEEVHEMGK 840 RGLELLNSVP IQRLSNSTCD DYGSRQDSRN LVSGITSVGP LDY |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | ARF family protein |