PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518268.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MIKC_MADS

Protein Properties

Length: 309aa MW: 36249.8 Da PI: 6.7445

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518268.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	89.3	2e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr+g++KK +ELSvLCda++a+i+fss+gkl+ey+s XP_023518268.1 10 RIENRTTRQVTFSKRRAGLFKKTHELSVLCDAQIALIVFSSNGKLFEYCS 59 8***********************************************96 PP
2	K-box	51.4	4.5e-18	85	170	12	97
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 ++ e+l++ l+ ++k +++Lq ++ ++ edL++ +l++L ++e++L++sl+++R++K+e+l +q+e+l++kek+l++en+++ + XP_023518268.1 85 NDPEELERLLRIMRKDTDELQLSLQRYTAEDLSTFQLRDLDEIENRLQTSLNRVRARKSEVLQQQVENLRRKEKMLEDENEQIYHL 170 5567777888899********************************************************************98765 PP

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence
MGRGKIAIRR IENRTTRQVT FSKRRAGLFK KTHELSVLCD AQIALIVFSS NGKLFEYCSQ 60 ATCMDQIIRR YQIAIGNPIP DQNMNDPEEL ERLLRIMRKD TDELQLSLQR YTAEDLSTFQ 120 LRDLDEIENR LQTSLNRVRA RKSEVLQQQV ENLRRKEKML EDENEQIYHL IREQQMAMEE 180 QQEVAAAMMM QKRRSEEEEM RIRRPGDHQN QNQNHHHHHH YHHHHHGVED QAVVSMEGDD 240 DDHGDAFGFS NPHIIHPHLQ LQLHPHDEPN SVLQLGGPLP PPPPPPFLHP YRLQPFQPNL 300 HSSTTYATP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23260.2	1e-51	MIKC_MADS family protein