PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023518205.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26497 Da    PI: 10.1746
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023518205.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.4e-311766150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_023518205.1 17 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 66
                    79***********************************************8 PP
2K-box113.22.6e-37871818100
           K-box   8 s..leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                        ++e++++ +qqe+akL+ +i nLq+++R++lG++L+sLs+k+L++Le++Lek++++iRskKnell+++ie+++k+e +l+++n+ Lr+k++e
  XP_023518205.1  87 TgsTSETNTQFYQQEAAKLRVQIGNLQNSNRNMLGDSLSSLSVKDLKSLESKLEKGISRIRSKKNELLFAEIEYMRKREFDLHNNNQLLRAKIAE 181
                     135899**************************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    
MSDSPQKKMG RGKIEIKRIE NTTNRQVTFC KRRNGLLKKA YELSVLCDAE VALIVFSTRG  60
RLYEYANNSV KTTIDRYKKA SSNSPNTGST SETNTQFYQQ EAAKLRVQIG NLQNSNRNML  120
GDSLSSLSVK DLKSLESKLE KGISRIRSKK NELLFAEIEY MRKREFDLHN NNQLLRAKIA  180
ESERNVNMMG GGEFELMQSH PYDPRDFFQV NGLQHNQQYP RQDNMSLQLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.13e-98MIKC_MADS family protein