PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023518121.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 897aa MW: 99986.9 Da PI: 6.4347

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023518121.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48	2.2e-15	159	205	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_023518121.1 159 VHNLSEKRRRSRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 205 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 897 aa Download sequence
MDHSISNKCD PNACISSTWT LPAVSSDEIS LFLQHILPRS SPSIFSDLTS NVRPITPLTQ 60 NIPPSYTTPN ALPAHRISAV DSSEQFANSS SSAGLHDPFR SCPTPTPPNA SSASVGASDN 120 HENDEFDCES EEGLEALIEE MPSKPYPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN 180 LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMNHGLSLH PMNLPGTLQY RQLSHMRMDF 240 TEENRSLSSD QERPNRVFLS LPDQKAASIH PFMPDIGRSN AETPFELVPP VQAHLLPFYL 300 SESSKRLKEI GTDVRRDHQV NATQSETTPF VSLPYNIAAP DLQELQNCVS VEPCIIEGNR 360 SGVVLNTPEH SHVFPSLFNG IDTGRPTETT GPMSDHKSGS MTDQLSNQTS IFGLRLWVVL 420 GVCVGAAFVL FLFLISLWIA SKRSRRKISH RPTIPVDSKE IQEIRIDHAL AQTQEHKPTR 480 PHFQVDPLPE PEIIPGIERQ ALLSLPQEEE RVNRIHIEIG KDHRISYPER LGRSSSSQGS 540 GEGRCGGDQL PIVVPEVSHL GWGHWYTLRE LEASTNGFSP DNVIGEGGYG IVYHGILEDG 600 TQVAVKNLLN NRGQAEKEFK VEVEAIGRVR HKNLVRLLGY CAEGAHRMLV YEYINNGNLE 660 QWLHGEVGSY SPLTWEIRMN IILGTAKGLA YLHEGLEPKV VHRDIKSSNI LLDKQWNSKV 720 SDFGLAKLLC SDNSYITTRV MGTFGYVAPE YASTGMLNER SDVYGFGILV MEIISGRNPV 780 DYSRPPDEVN LIDWLKRMVS NRNPEGVLDP KLSEKPTSRA LKRALLVALR CVDPNAQKRP 840 KMGHIIHMLE AEEATFKGDR KAGKDPENSQ DNVKDGLNER QATELGGSNV DELSMRQ

Sequence ? help Back to Top

Protein Sequence Length: 897 aa Download sequence

MDHSISNKCD PNACISSTWT LPAVSSDEIS LFLQHILPRS SPSIFSDLTS NVRPITPLTQ  60
NIPPSYTTPN ALPAHRISAV DSSEQFANSS SSAGLHDPFR SCPTPTPPNA SSASVGASDN  120
HENDEFDCES EEGLEALIEE MPSKPYPRSS SKRSRAAEVH NLSEKRRRSR INEKMKALQN  180
LIPNSNKTDK ASMLDEAIEY LKQLQLQVQM LSMNHGLSLH PMNLPGTLQY RQLSHMRMDF  240
TEENRSLSSD QERPNRVFLS LPDQKAASIH PFMPDIGRSN AETPFELVPP VQAHLLPFYL  300
SESSKRLKEI GTDVRRDHQV NATQSETTPF VSLPYNIAAP DLQELQNCVS VEPCIIEGNR  360
SGVVLNTPEH SHVFPSLFNG IDTGRPTETT GPMSDHKSGS MTDQLSNQTS IFGLRLWVVL  420
GVCVGAAFVL FLFLISLWIA SKRSRRKISH RPTIPVDSKE IQEIRIDHAL AQTQEHKPTR  480
PHFQVDPLPE PEIIPGIERQ ALLSLPQEEE RVNRIHIEIG KDHRISYPER LGRSSSSQGS  540
GEGRCGGDQL PIVVPEVSHL GWGHWYTLRE LEASTNGFSP DNVIGEGGYG IVYHGILEDG  600
TQVAVKNLLN NRGQAEKEFK VEVEAIGRVR HKNLVRLLGY CAEGAHRMLV YEYINNGNLE  660
QWLHGEVGSY SPLTWEIRMN IILGTAKGLA YLHEGLEPKV VHRDIKSSNI LLDKQWNSKV  720
SDFGLAKLLC SDNSYITTRV MGTFGYVAPE YASTGMLNER SDVYGFGILV MEIISGRNPV  780
DYSRPPDEVN LIDWLKRMVS NRNPEGVLDP KLSEKPTSRA LKRALLVALR CVDPNAQKRP  840
KMGHIIHMLE AEEATFKGDR KAGKDPENSQ DNVKDGLNER QATELGGSNV DELSMRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	2e-35	bHLH family protein