PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023518109.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 212aa MW: 24387.4 Da PI: 6.0483 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.6 | 5e-19 | 57 | 110 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ +f+++qle Le+ F+++ ++ e++ +L+k++gL+ rq+ vWFqNrRa+ k XP_023518109.1 57 KKKRFSRDQLESLERSFQEEVKLEPERKMKLSKEIGLQPRQIAVWFQNRRARSK 110 5678************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 108.1 | 6.3e-35 | 56 | 148 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+r+s++q+++LE+sF+ee kLeperK++l++e+glqprq+avWFqnrRAR k kql + y++Lk+++da++ e+ L+++v+eLr+ l+e XP_023518109.1 56 EKKKRFSRDQLESLERSFQEEVKLEPERKMKLSKEIGLQPRQIAVWFQNRRARSKVKQLQHLYDTLKQEFDAISMEKLDLQQQVRELRSMLRE 148 69**************************************************************************************98875 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MDSYNGSDLS PHYVPPPPQS SSALLYPCSL DQFPETTETK RLGMEAQESR VGGVDEKKKR 60 FSRDQLESLE RSFQEEVKLE PERKMKLSKE IGLQPRQIAV WFQNRRARSK VKQLQHLYDT 120 LKQEFDAISM EKLDLQQQVR ELRSMLREQA VRNHGSMAYM TVSEEEAAES TAEGVRSWNN 180 HIFNVENVEQ ISASSIPSPW SCSQVAHLPS YP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 57 | 86 | KKKRFSRDQLESLERSFQEEVKLEPERKMK |
2 | 105 | 113 | RRARSKVKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-38 | HD-ZIP family protein |