PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517919.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

MYB

Protein Properties

Length: 387aa MW: 41478.1 Da PI: 4.6975

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517919.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.9e-16	65	110	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd +l ++v ++G ++W++Iar + gR++k+c++rw + XP_023517919.1 65 KGPWSPEEDAILSRLVGKFGARNWSLIARGIA-GRSGKSCRLRWCNQ 110 79****************************.*********985 PP
2	Myb_DNA-binding	56.9	4.7e-18	117	161	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+++T eEd ++v a++ +G++ W++Iar ++ gRt++ +k++w++ XP_023517919.1 117 RKPFTDEEDRIIVAAHAVHGNK-WAAIARLLP-GRTDNAIKNHWNST 161 789*****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MEAASAAAAA DADADEVDAT VAEGGGVDAC DAVVSVADCA SGDDAVPMVG EGESTGGRGG 60 KDRVKGPWSP EEDAILSRLV GKFGARNWSL IARGIAGRSG KSCRLRWCNQ LDPSVKRKPF 120 TDEEDRIIVA AHAVHGNKWA AIARLLPGRT DNAIKNHWNS TLRRRCTELE RIKLESGNTV 180 DDASLEKTKG SSEETLSCGD VNSFKSLEGK DTCSREHIDD QFEDKVPMAI EGQFSHEVKE 240 QEQPTLFRPV ARVSAFSVYN PLDGQESSRA FLRPVPMQGA LIQASTPDVE ASKLLEGVYC 300 DRSVPHQCGH GCCESYNQGS TMDTLLGPEF VDFSEPPPSF TSFELAAIAT DISNLAWLKS 360 GLENGSVRAM GDSAGRLNGS QMQVGRL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MEAASAAAAA DADADEVDAT VAEGGGVDAC DAVVSVADCA SGDDAVPMVG EGESTGGRGG  60
KDRVKGPWSP EEDAILSRLV GKFGARNWSL IARGIAGRSG KSCRLRWCNQ LDPSVKRKPF  120
TDEEDRIIVA AHAVHGNKWA AIARLLPGRT DNAIKNHWNS TLRRRCTELE RIKLESGNTV  180
DDASLEKTKG SSEETLSCGD VNSFKSLEGK DTCSREHIDD QFEDKVPMAI EGQFSHEVKE  240
QEQPTLFRPV ARVSAFSVYN PLDGQESSRA FLRPVPMQGA LIQASTPDVE ASKLLEGVYC  300
DRSVPHQCGH GCCESYNQGS TMDTLLGPEF VDFSEPPPSF TSFELAAIAT DISNLAWLKS  360
GLENGSVRAM GDSAGRLNGS QMQVGRL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09230.1	1e-103	MYB family protein