PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517849.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 716aa MW: 77986.3 Da PI: 7.5794

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517849.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	144	245	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023517849.1 144 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 235 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023517849.1 236 GELRLGIRRA 245 999**996 PP
2	Auxin_resp	105.2	7.8e-35	271	351	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023517849.1 271 FNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 351 689****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 716 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE 120 EEMTNDSEGE DFEGSEKTTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP 180 SQELVAKDLL GIKWKFRHIY RGQPRRHLLT TGWSAFVNKK RLVSGDAVLF LRGNDGELRL 240 GIRRAAQLKS GSPFSNICSQ QLNSSSIMDV FNAISSKTSF SVYYNPRATS SQFVLPFHKF 300 LKSINHSFSA GMRFSLSFET DDAADRRCTG RITGVGDVDP IRWPGSRWRS LVVRWDDVET 360 KRHGRVSPWE IEPSGSVSVA SNVVPPGLKR TRIGLSPTEL EFPVPNGIGA SDFGESLRFQ 420 KVLQGQEILG YSTPIDGDDN IRHPPEKRRS FPGLLGSGIA LMRNGPRIPV TNSETSSRGF 480 MFDESFQFHK VLQGQEMYPS PFFGIATATN EVKASGGYGP VDSVPLSRSK DGWPMTMQSE 540 NFLTRSSIPS VQVSSPSSVF MFQQSMVPVP SFNSYNRGNF TEQRTMNKST SHNSGTAFMT 600 DHNSSTEVPQ GMRPTSLGVQ KQLGLSHPST TEPAFTGNKA GCRLFGFSLT EGKNVGNTTD 660 KASPATTPIN AGTTSVLSSN SGLRCPLKSP LMNKVVGSNC TKGAVQYHFA NCSTYY

Sequence ? help Back to Top

Protein Sequence Length: 716 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HAEAGSDEVY AQVSLFPENE  120
EEMTNDSEGE DFEGSEKTTT PHMFCKTLTA SDTSTHGGFS VPRRAAEDCF PPLDYSQQRP  180
SQELVAKDLL GIKWKFRHIY RGQPRRHLLT TGWSAFVNKK RLVSGDAVLF LRGNDGELRL  240
GIRRAAQLKS GSPFSNICSQ QLNSSSIMDV FNAISSKTSF SVYYNPRATS SQFVLPFHKF  300
LKSINHSFSA GMRFSLSFET DDAADRRCTG RITGVGDVDP IRWPGSRWRS LVVRWDDVET  360
KRHGRVSPWE IEPSGSVSVA SNVVPPGLKR TRIGLSPTEL EFPVPNGIGA SDFGESLRFQ  420
KVLQGQEILG YSTPIDGDDN IRHPPEKRRS FPGLLGSGIA LMRNGPRIPV TNSETSSRGF  480
MFDESFQFHK VLQGQEMYPS PFFGIATATN EVKASGGYGP VDSVPLSRSK DGWPMTMQSE  540
NFLTRSSIPS VQVSSPSSVF MFQQSMVPVP SFNSYNRGNF TEQRTMNKST SHNSGTAFMT  600
DHNSSTEVPQ GMRPTSLGVQ KQLGLSHPST TEPAFTGNKA GCRLFGFSLT EGKNVGNTTD  660
KASPATTPIN AGTTSVLSSN SGLRCPLKSP LMNKVVGSNC TKGAVQYHFA NCSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein