PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517848.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

ARF

Protein Properties

Length: 717aa MW: 78114.5 Da PI: 7.5794

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517848.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	74.8	1e-23	145	246	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d+ g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + ++ XP_023517848.1 145 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLLGIKWKFRHIYRGQPRRHLLTTGWSAFVNKKRLVSGDAVLFL--RGND 236 99**************************963.3445679********************************************..4489 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +el+++++r+ XP_023517848.1 237 GELRLGIRRA 246 999**996 PP
2	Auxin_resp	105.2	7.8e-35	272	352	2	82
Auxin_resp 2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+s+k+ F+v+YnPra++s+Fv +++k++k++++++s+GmRf ++fet+d++ rr++G ++gv d+dp+rWp+S+WrsL XP_023517848.1 272 FNAISSKTSFSVYYNPRATSSQFVLPFHKFLKSINHSFSAGMRFSLSFETDDAADRRCTGRITGVGDVDPIRWPGSRWRSL 352 689****************************************************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 717 aa Download sequence
MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN 60 KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN 120 EEEMTNDSEG EDFEGSEKTT TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR 180 PSQELVAKDL LGIKWKFRHI YRGQPRRHLL TTGWSAFVNK KRLVSGDAVL FLRGNDGELR 240 LGIRRAAQLK SGSPFSNICS QQLNSSSIMD VFNAISSKTS FSVYYNPRAT SSQFVLPFHK 300 FLKSINHSFS AGMRFSLSFE TDDAADRRCT GRITGVGDVD PIRWPGSRWR SLVVRWDDVE 360 TKRHGRVSPW EIEPSGSVSV ASNVVPPGLK RTRIGLSPTE LEFPVPNGIG ASDFGESLRF 420 QKVLQGQEIL GYSTPIDGDD NIRHPPEKRR SFPGLLGSGI ALMRNGPRIP VTNSETSSRG 480 FMFDESFQFH KVLQGQEMYP SPFFGIATAT NEVKASGGYG PVDSVPLSRS KDGWPMTMQS 540 ENFLTRSSIP SVQVSSPSSV FMFQQSMVPV PSFNSYNRGN FTEQRTMNKS TSHNSGTAFM 600 TDHNSSTEVP QGMRPTSLGV QKQLGLSHPS TTEPAFTGNK AGCRLFGFSL TEGKNVGNTT 660 DKASPATTPI NAGTTSVLSS NSGLRCPLKS PLMNKVVGSN CTKGAVQYHF ANCSTYY

Sequence ? help Back to Top

Protein Sequence Length: 717 aa Download sequence

MAALIDLNTT EEDDAPSSAA SSASSSSASA LTSSPSPSLT SSICLELWHA CAGPLTSLPN  60
KGSLVVYFPQ GHLEQMQEFP ATAAYDLPPH ILCRVIDVQL HQAEAGSDEV YAQVSLFPEN  120
EEEMTNDSEG EDFEGSEKTT TPHMFCKTLT ASDTSTHGGF SVPRRAAEDC FPPLDYSQQR  180
PSQELVAKDL LGIKWKFRHI YRGQPRRHLL TTGWSAFVNK KRLVSGDAVL FLRGNDGELR  240
LGIRRAAQLK SGSPFSNICS QQLNSSSIMD VFNAISSKTS FSVYYNPRAT SSQFVLPFHK  300
FLKSINHSFS AGMRFSLSFE TDDAADRRCT GRITGVGDVD PIRWPGSRWR SLVVRWDDVE  360
TKRHGRVSPW EIEPSGSVSV ASNVVPPGLK RTRIGLSPTE LEFPVPNGIG ASDFGESLRF  420
QKVLQGQEIL GYSTPIDGDD NIRHPPEKRR SFPGLLGSGI ALMRNGPRIP VTNSETSSRG  480
FMFDESFQFH KVLQGQEMYP SPFFGIATAT NEVKASGGYG PVDSVPLSRS KDGWPMTMQS  540
ENFLTRSSIP SVQVSSPSSV FMFQQSMVPV PSFNSYNRGN FTEQRTMNKS TSHNSGTAFM  600
TDHNSSTEVP QGMRPTSLGV QKQLGLSHPS TTEPAFTGNK AGCRLFGFSL TEGKNVGNTT  660
DKASPATTPI NAGTTSVLSS NSGLRCPLKS PLMNKVVGSN CTKGAVQYHF ANCSTYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33860.1	0.0	ARF family protein