PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517780.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

bHLH

Protein Properties

Length: 400aa MW: 43946.6 Da PI: 5.1907

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517780.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.9	9.7e-05	294	326	17	54
HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ L++l+ + +K + a++L +A+eYIk L XP_023517780.1 294 GDRVTALQQLVSPF-----GKTDTASVLHEAIEYIKFL 326 55666677777776.....8****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence
MAEDFQAAIC GDNWWSSSRN MMVTVGGLSP CSVGIGDLGW PPADDFLDIK PKSATDSDHN 60 NSNNNNSMLF QDYSTFQMMG FALSSSTTSD HWNQPDGLLC GDGRGESNFN SNGIERYKDE 120 EIKTSFSSDS SFINGLKQGD DEDYNMLEQN GLMSINCSST TNTPTCQGLF PLDSTLYGYP 180 HQQQQQQQPP HAHSLFNATH PHPQPVSAAL HFANNTPFWN APSAATSTHI PQGIASLLEQ 240 KSAKPINNGN CENGQEPKKC DKNSANESVP VFKRPRIETP SPLPTFKVRK EKLGDRVTAL 300 QQLVSPFGKT DTASVLHEAI EYIKFLHDQV SVLSTPYMKS NNGITPTLQH QQVCEKEDPD 360 CPKQDLRSRG LCLVPVSSTF PVSNVGTADF WTPTFGGTFR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence

MAEDFQAAIC GDNWWSSSRN MMVTVGGLSP CSVGIGDLGW PPADDFLDIK PKSATDSDHN  60
NSNNNNSMLF QDYSTFQMMG FALSSSTTSD HWNQPDGLLC GDGRGESNFN SNGIERYKDE  120
EIKTSFSSDS SFINGLKQGD DEDYNMLEQN GLMSINCSST TNTPTCQGLF PLDSTLYGYP  180
HQQQQQQQPP HAHSLFNATH PHPQPVSAAL HFANNTPFWN APSAATSTHI PQGIASLLEQ  240
KSAKPINNGN CENGQEPKKC DKNSANESVP VFKRPRIETP SPLPTFKVRK EKLGDRVTAL  300
QQLVSPFGKT DTASVLHEAI EYIKFLHDQV SVLSTPYMKS NNGITPTLQH QQVCEKEDPD  360
CPKQDLRSRG LCLVPVSSTF PVSNVGTADF WTPTFGGTFR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61660.1	1e-59	bHLH family protein