PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517654.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family ARF
Protein Properties Length: 866aa    MW: 96737 Da    PI: 6.6547
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517654.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3772.1e-24127228199
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   +++
  XP_023517654.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WNE 217
                     99*****************************86555544..8************************************************..889 PP

                     EE..EEEEE-S CS
              B3  89 efelvvkvfrk 99 
                     + +l+++++r+
  XP_023517654.1 218 KNQLLLGIRRA 228
                     9999****997 PP
2Auxin_resp120.61.2e-39253336183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     aahaa+t+s F+++YnPras+seF+++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  XP_023517654.1 253 AAHAAATNSRFTIFYNPRASPSEFIIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 336
                     79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    
MRLSAAGFSP QPPEGEKRVL NSELWHACAG PLVSLPAVGS RAVYFPQGHS EQVAISTNKE  60
VDAHIPSYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSAQEQKEP YLPAELGAPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFTQ QPPAQELMAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VIFIWNEKNQ LLLGIRRASR PQTMMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFIIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPARWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYPSPFS LRLKRPWPTG LPSFHGLKED DLGLNSQLMW LRGDALDRGI QPLNLHGIGV  420
APWMQPRLDA SMVGLQPEIY QAMAAAALQE MRTVDPAKAQ AASLLQFQQT QNLPNRPATF  480
MSPQMLQQPQ PHQTFIQNDH EIQHLPHSQA PTQPTVLRQE MKHQTFNNEQ QQQQQQQQQP  540
QQQVFDHQQI SSSISTMTQF GSVSQSLQTI PSFCRQQSFS DSNGIHMTNP IISPLHSLLG  600
SFPQDESSQL LNLPRTHPMI HSSTWPSKRA AIDPHISSGN SQFVHLQEEN MGTAQANISQ  660
NVSLPPFPGR ECSLDQRNGD PQSNLLFGVN IEPSSLLMQN GMPNIRGICS DSDSTAIPFS  720
SNYVNTAGTN FSANPAGTPS NCIEDSGILP NFVKVYKSGT FGRSLDISKF SSYHQLRSEL  780
AHKFNLEGEL EDPLRSGWQL VFVDRENDVL LLGDDPWQEF VNSVWCIKIL SPQEVQEMGR  840
VDSYADRQES SRNLSSGITS VGSLEY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37020.20.0ARF family protein