PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_023517636.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
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Family | C3H | ||||||||
Protein Properties | Length: 859aa MW: 95447.4 Da PI: 8.7245 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.7 | 3.7e-07 | 280 | 299 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ffa+ GtC+ G +Ck++H XP_023517636.1 280 ICNFFAA-GTCRNGKNCKYSH 299 8**9999.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 859 aa Download sequence |
MSGSGRKRSS KWDLREESRP GWISPELASD DGSKRSGMEI TNTVSKSKKD WGLLSKEPLS 60 ETRDSHKEDY TNKGYNKNME GTAEWDADKS YSTRMSPGLD GWRRHSSNPS DRNDWSRGRS 120 RSRSWSRSRS RSRTPPRSFK RDSGFHDRNR NRTRVSTQLC RDFASGRCRR GGGCPFLHAE 180 NQNLDDSWDS RNKKGGRSLR STPHDFRDYS RSGRSAAPCT DFVKGRCHRG ESCKYPHDSG 240 FHELSRGSSN DISRDRENDR SKEAYLSRGE REPSSSSLVI CNFFAAGTCR NGKNCKYSHQ 300 SQPCASLERK SSADGWEQVE CSDGRERLWD GSKSNELASG SDFTQLREEK NKQIASQESR 360 YTWPSELKGG HGLNNESKIQ WDQAASIKAV QNSKNDTILS KPEDAGGCIG TSDSRGHRKW 420 PSDDMEMSPD WHFPVQPSNH VVKGDCNIIL DSGSQTSMAL ATLSHAIVQE ALAKKQDVTI 480 EPLTVDNTHF RQNHNLTKDV TMASAFNDKI TIDKTIASHA EGNPSGNIVL GQKMAYHTNH 540 PGGSVLNPNV VDGIFRVKPR EDDRSMPGIN PVTTITPNMV TSEQITQLTN LSVSLAQYFG 600 NVQPLPQLYA SLSTHNVSEI PSFPYSDAPV GALGTLMKTS PIIECSKQHD STVCNSLEVK 660 KLEATKIPSD SLLNFTGQKS MTDAKDEVQI PIFPLSSDPS NKIVISAKET PNESDAINHG 720 KRAAEGEANN KKNGDGDNEN RTEAGANEDS EENDTTENAN GNDGVHDKKK GKDTKGIRAF 780 KFALVEFIKE LLKPTWKEGH ISKDVYKTIV KKVVDKVTGT LQGGHIPQTQ EKIDQYLSFS 840 KSKLTKLVQA YVDRVQKTS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 2e-11 | C3H family protein |