PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517620.1
Organism
Cucurbita pepo subsp. pepo
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25844.5 Da    PI: 8.6706
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517620.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF901.2e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +i+n + rqvtfskRr g++KKA+ELSvLCda+va+iifs+tgkl+eyss
  XP_023517620.1 10 KIDNATARQVTFSKRRRGLFKKAKELSVLCDADVALIIFSTTGKLFEYSS 59
                    69**********************************************96 PP
2K-box53.78.9e-19911721899
           K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                     + ++++L+kei +  +++R++ Ge+L++L++ eLqqLe+ Le +l+++ +kK e ++++i +lq+k  el eenk+L+k+ e
  XP_023517620.1  91 NSNYTRLNKEIAEKTHQLRQMRGEELQTLNIDELQQLEKSLEFGLSRVMEKKGEKIMKEITDLQRKSAELVEENKRLKKQAE 172
                     56799*************************************************************************9976 PP
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    
MAKEKIQIRK IDNATARQVT FSKRRRGLFK KAKELSVLCD ADVALIIFST TGKLFEYSSS  60
SMKGIIERHN LHSKNLQKLE QPSLELQLVE NSNYTRLNKE IAEKTHQLRQ MRGEELQTLN  120
IDELQQLEKS LEFGLSRVME KKGEKIMKEI TDLQRKSAEL VEENKRLKKQ AEKMDGVRNF  180
GVEPEILLVE DGQSSNSVTE ACVTNSNGPA QDLESSDTSL KLGLAYSG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.13e-98MIKC_MADS family protein