PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_023517418.1

Organism

Cucurbita pepo subsp. pepo

Taxonomic ID

3664

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo

Family

C3H

Protein Properties

Length: 743aa MW: 81674.8 Da PI: 6.8433

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_023517418.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.1	2.7e-07	194	214	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 ++C+f+a+ G+C G++C+F H XP_023517418.1 194 AICDFYAK-GWCIKGSSCSFLH 214 68****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 743 aa Download sequence
MDAKRHDKHL RSDTITTTES SEVKKLSSVG GTESNGNIEF ARLSGEPLTK LVEQSHGECT 60 KVESRKCPKD KETEDQELTV GDKDVEALRN NLPKDSGGSI YNSKVPLCNR GIISAKVSNG 120 LSVTVEDSDI GLENHLVGGN LGSTNPERES TQMDLQLENG KNQMASRSAA SKKRTRKLSH 180 GADVNIEQKR PAAAICDFYA KGWCIKGSSC SFLHIKDNAI GSDQHSEEHA GAAYLKRQVQ 240 PNQAGLQYSA DASKSPVFHH LPNSSFLKDS SLSLKFGISS ERTLPRDFTE SKGWDVLHEK 300 NKFLLHQRED SLLSELPDCQ KLPSTSFDVS FPLNREGSTA RNEQPPEFGP SSGGFAKLSV 360 MEEPANVACP RLLNDYHSPV LRSSLNSNTT LTKGGILSSR FTTSNDSFPF TPSSSASFFG 420 AQKMSIIDGE HRVSMPASSF MRSSPFSPSE SDNSLINASM NSSDYKTKYS CDDWEPSEPF 480 RPSFFIPSIN TASQYDPFLD SIELPRKVGG CHNVSLDRQG HEEVSPLSTL HRASGNFMVP 540 GSSKPELNDD TSSLSSHNKA EDKNEKAGHV EGTDSLMFEA EIQGSSGIDG CNGSRTREDD 600 HMGLSREKNV PKKMKTDTDG EIKLSNIAFH EKESEAESDR QLGDMDGKHL IDGNVHKESK 660 ATRHFRSALI ELVKGILRPK WREGHLKKDV HNTVVKKTLD KVLGTLQPFQ VPTTVESVKQ 720 YLSSSRPKIE KLVEGYVSKY GKS

Sequence ? help Back to Top

Protein Sequence Length: 743 aa Download sequence

MDAKRHDKHL RSDTITTTES SEVKKLSSVG GTESNGNIEF ARLSGEPLTK LVEQSHGECT  60
KVESRKCPKD KETEDQELTV GDKDVEALRN NLPKDSGGSI YNSKVPLCNR GIISAKVSNG  120
LSVTVEDSDI GLENHLVGGN LGSTNPERES TQMDLQLENG KNQMASRSAA SKKRTRKLSH  180
GADVNIEQKR PAAAICDFYA KGWCIKGSSC SFLHIKDNAI GSDQHSEEHA GAAYLKRQVQ  240
PNQAGLQYSA DASKSPVFHH LPNSSFLKDS SLSLKFGISS ERTLPRDFTE SKGWDVLHEK  300
NKFLLHQRED SLLSELPDCQ KLPSTSFDVS FPLNREGSTA RNEQPPEFGP SSGGFAKLSV  360
MEEPANVACP RLLNDYHSPV LRSSLNSNTT LTKGGILSSR FTTSNDSFPF TPSSSASFFG  420
AQKMSIIDGE HRVSMPASSF MRSSPFSPSE SDNSLINASM NSSDYKTKYS CDDWEPSEPF  480
RPSFFIPSIN TASQYDPFLD SIELPRKVGG CHNVSLDRQG HEEVSPLSTL HRASGNFMVP  540
GSSKPELNDD TSSLSSHNKA EDKNEKAGHV EGTDSLMFEA EIQGSSGIDG CNGSRTREDD  600
HMGLSREKNV PKKMKTDTDG EIKLSNIAFH EKESEAESDR QLGDMDGKHL IDGNVHKESK  660
ATRHFRSALI ELVKGILRPK WREGHLKKDV HNTVVKKTLD KVLGTLQPFQ VPTTVESVKQ  720
YLSSSRPKIE KLVEGYVSKY GKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	7e-33	C3H family protein