PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_023517416.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita; Cucurbita pepo
Family C3H
Protein Properties Length: 771aa    MW: 84885.5 Da    PI: 6.9162
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_023517416.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH222.8e-07223243425
                     ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                     ++C+f+a+ G+C  G++C+F H
  XP_023517416.1 223 AICDFYAK-GWCIKGSSCSFLH 243
                     68******.************* PP

Sequence ? help Back to Top
Protein Sequence    Length: 771 aa     Download sequence    
MRGIFVELGS RGYAQVPRKN VYLVDVCNDM DAKRHDKHLR SDTITTTESS EVKKLSSVGG  60
TESNGNIEFA RLSGEPLTKL VEQSHGECTK VESRKCPKDK ETEDQELTVG DKDVEALRNN  120
LPKDSGGSIY NSKVPLCNRG IISAKVSNGL SVTVEDSDIG LENHLVGGNL GSTNPEREST  180
QMDLQLENGK NQMASRSAAS KKRTRKLSHG ADVNIEQKRP AAAICDFYAK GWCIKGSSCS  240
FLHIKDNAIG SDQHSEEHAG AAYLKRQVQP NQGLQYSADA SKSPVFHHLP NSSFLKDSSL  300
SLKFGISSER TLPRDFTESK GWDVLHEKNK FLLHQREDSL LSELPDCQKL PSTSFDVSFP  360
LNREGSTARN EQPPEFGPSS GGFAKLSVME EPANVACPRL LNDYHSPVLR SSLNSNTTLT  420
KGGILSSRFT TSNDSFPFTP SSSASFFGAQ KMSIIDGEHR VSMPASSFMR SSPFSPSESD  480
NSLINASMNS SDYKTKYSCD DWEPSEPFRP SFFIPSINTA SQYDPFLDSI ELPRKVGGCH  540
NVSLDRQGHE EVSPLSTLHR ASGNFMVPGS SKPELNDDTS SLSSHNKAED KNEKAGHVEG  600
TDSLMFEAEI QGSSGIDGCN GSRTREDDHM GLSREKNVPK KMKTDTDGEI KLSNIAFHEK  660
ESEAESDRQL GDMDGKHLID GNVHKESKAT RHFRSALIEL VKGILRPKWR EGHLKKDVHN  720
TVVKKTLDKV LGTLQPFQVP TTVESVKQYL SSSRPKIEKL VEGYVSKYGK S
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.17e-33C3H family protein